Basic Information

Insect: Sycophila texana
Gene Symbol: RREB1
Assembly: GCA_035582955.1
Location: JAWWEN010000002.1:945493-951168[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.014 1.6 10.2 0.0 1 23 36 58 36 58 0.96

2 14 0.0013 0.15 13.4 0.0 1 23 73 95 73 95 0.97

3 14 1.9e-06 0.00022 22.3 2.6 1 23 101 124 101 124 0.98

4 14 0.32 37 5.8 0.0 1 23 209 233 209 233 0.89

5 14 0.63 72 4.9 1.9 2 23 239 261 239 261 0.91

6 14 1.4 1.6e+02 3.9 0.5 1 19 314 332 314 334 0.90

7 14 0.043 4.9 8.6 0.1 1 23 451 473 451 473 0.96

8 14 2.6e-05 0.003 18.7 0.3 1 23 482 504 482 504 0.98

9 14 0.00035 0.041 15.2 2.5 1 23 510 533 510 533 0.97

10 14 0.00022 0.025 15.8 3.1 1 23 905 928 905 928 0.97

11 14 0.00068 0.078 14.3 0.1 3 23 1207 1227 1205 1227 0.97

12 14 0.3 34 6.0 6.5 1 23 1233 1256 1233 1256 0.97

13 14 0.017 1.9 9.9 2.1 1 23 1318 1342 1318 1342 0.94

14 14 9.4 1.1e+03 1.2 2.7 1 23 1454 1477 1454 1477 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.014	1.6	10.2	0.0	1	23	36	58	36	58	0.96
2	14	0.0013	0.15	13.4	0.0	1	23	73	95	73	95	0.97
3	14	1.9e-06	0.00022	22.3	2.6	1	23	101	124	101	124	0.98
4	14	0.32	37	5.8	0.0	1	23	209	233	209	233	0.89
5	14	0.63	72	4.9	1.9	2	23	239	261	239	261	0.91
6	14	1.4	1.6e+02	3.9	0.5	1	19	314	332	314	334	0.90
7	14	0.043	4.9	8.6	0.1	1	23	451	473	451	473	0.96
8	14	2.6e-05	0.003	18.7	0.3	1	23	482	504	482	504	0.98
9	14	0.00035	0.041	15.2	2.5	1	23	510	533	510	533	0.97
10	14	0.00022	0.025	15.8	3.1	1	23	905	928	905	928	0.97
11	14	0.00068	0.078	14.3	0.1	3	23	1207	1227	1205	1227	0.97
12	14	0.3	34	6.0	6.5	1	23	1233	1256	1233	1256	0.97
13	14	0.017	1.9	9.9	2.1	1	23	1318	1342	1318	1342	0.94
14	14	9.4	1.1e+03	1.2	2.7	1	23	1454	1477	1454	1477	0.82

Sequence Information

Coding Sequence: atgcTTGCAGTGACTGCCGAGACTGGACCCGATCAGCGCGACGGCCGCAGCGAGAGCCAAACGGATGTTGCATCATCACCAGTGGTCGAGCAGCCGGAAGGTAGCCACCCGTGCCCGGCGTGTCCCCTGGTGCTGCCGAGTTCCCGCGAGCTGACGACGCACCTGCGCGGTCACAACTCGCCGCGCGGCAGCACCGACAGCGGCGAGGAGGCCGACTACGCCTGCGGCGTCTGCCGCAAGGTCCTCAGCTCCGCGAGCTCCCTCGACCGCCACGTCCTCGTGCACTCCGGCGAGCGGCCCTTCAAGTGCAAGCACTGCGAGATGGCCTTCACCACCAACGGCAACATGAACAGGCACCTGCGCACCGCCCACTGCTCCTCCTCGCCCGGCCAGCACAGCTGCACCGACAGCGACGGCAGCAGCGACAGCGAGCGGCCCCGCACCACCGGCAGCAACCACATCCACGAGGAGTACAACAACAACGAGGTCGCCGCCGAGCGCAAGTCGCCCACCCTCAAGCGCAAGTGTCCCGACTACGCCGACGAGGCCGAGTCCCAGCAGCAGCGCCGGCACAAGATCCTCCTCGAGACCTACGCCGAGGTCGACGGCCGCTACGCCGGCGGCTACAGCTGCGCCGTCtgcggccgcggcgacttcACCAGCGGCGGCCAGCTCGAGGCCCACATGGAGCGCCAGCACCCCGAGAGCCAGCCCCGCTGCGAGCCCTGCAATCAGGTCTTCAAGAGCCACCGGGCCTTCAACCTCCACCGCTACGTCAGCCACTGCCGCGAGCCCGAGAGCCCGCGCAGCCTCCGCAACTCCGTCGTCGGCTTCAACGACCTCACCTTCGTCGACTTCTCCGCCGTCAAGTTCCCGGCTATAGCCCGGGCCGCCTGCGAGCGCGCCCTCCACCGGCCTGCCTCCGGCGAGACGCCACGCTACCAGTGCTCCAAGTGCCTGCGCGCCTTCCCCTGCCGCTCGGCCCTCGACGCCCACGAGACGGACTGCGGCCTGCTCCCGTCGGCGGAGCACCGGGCCCACGGCCCCGAGGACCAGTCGCTGCGCGACGACTTCTTCGCCGGCCTCGACCTCCAGAACAAGGCGGCCCTCGCCGAGGCCAAGGAGGGCAAGGACCTCGCCGACATCCAGAGCATCATCTCCGTCACCTCGGGCCCGATCCTCCAGAGCTTCTCGCGCTCGGACGCCGGCACGCCGGACAACTGCAAGGCTCTCTCCAGGCAGGGCTTCGGCTCGTCCGGCTCCTCGGGCACGCCCAGCTCCGAGTGCCTCGACGAGGAGGGCCAGGAGATGTTCGCCGCGGAGTTCCGCAAGATGAAGCTGAAGGGCGAGTTCCCCTGCAGGCTCTGCAAGGCCGTGTTCCCGAACCTGCGGGCTCTCAAGGGCCACAACAGGGCGCACATGGGGGTGCCCGCGGGTCTTCCCTACCCCTGCAACATGTGCCCCTACAGTAGCACCGACAAGGCCACTCTTGTGCGCCATCTGCGCTCCCACAACGGCGACCGGCCGTACGAGTGCTCCATCTGCAACTACGCCTTCACGACCAAGGCCAACTGCGAGCGGCACGTGAGGAACAGGCACGGAAAGCTCTCCCGCGAGGAGATCAAGAGCGTCCTGATCTACCACCCGAGCGAGGACTCGGCGAACGACGCGGCGGGCCTGGACGGCGGCTCGCCCAGGCCCGGCCTGGCTCGCGACGAGGTGCGCAAGGCCCTGGTCTACCCTGGCGAACGGGAGGAGCTGTCCCAGGCCCATTACCCAACGGCGGAGATCCGCGTGAAGGACGAGGCGAAGCTCAGGCAGCCCGCTCTGGCCGGCCTGGGCCTCGGACTCCCCGGCTACGACAAGGCCGATCTCTTCCCGCGGCCGCTGGagctcgccgccgccgagcaGCAGCCCAAGTCCCAGCACGAGGACGACCTGGACTCGCGCTCGTCCGCCGGCAGCGTATCTCTAGTCAGCGAAACCAAATCCGAGGGGCAGCAGCGCGTCCAGGCGCGGCCGATCGACTTGAAGAAGCCGTCGCCGGAGGAGCCGCCGGCCGAGCAGCCGGCCGCCCACGGCGAGGACGCGCCCCTCGACCTCTCCATGGACGTCCTCGACCTCAGCCGGAAGGCCAACGCCGAAgcggccgcggccgccgccgccgccgccgtggcTGCCGCGAAGGAGCGCGAGAACGACGAGGCCTACGCCGCCGCGGATCCCAGCCACAAGCAGAACAACTTCTACAGCCCGACGAATCAGCTGCTACTGACGCAGGCTCTACTGAAGGCGAACCAGGCTCAGCCGTGCTCCCTCGAGAGGCTCTACGCCAACGCCCAAATGCTCTACCAGAACTTGGGCAGCTTCTCGGCGGTGGGTGCCGGCATCCTCCAGCCGTACCTCTTCGGACCGCACCTATTCGGCCAGGAGTTCGCCATGAAGGACCGCCTGCAGAAGGGCCTGGTGCGCGGCCTGCAGACCAGCGGCGGCAGCCTCGTCGAGCCCACCGCCAGCGGGCCCAGCTACGCCCCTGCCTTCCCCCACGCCCGCACCGACCAGCCGGACTACCTGAGGCAGCAGAGCGTCGCGCCCGGACCCTCCAGGGACAACCACGACTCCGCCTCGAGCGCCAACTCCGTCAAGATGGTCATCAAGAACGGCGTGCTGATGCCCAAGCAGAAGCAGCGCAGATACCGCACCGAGCGGCCCTTCACCTGCGAGCACTGCAACGCCAAATTCACCCTGCGCAGCAACATGGAGCGTCACATCAAGCAGCAGCATCCGCAATACTGGAGCCAGCGGCCCAGGGGTGGACACTCGACCAGGGGTCGCCCGCCCGCGAATCCTCCCACGCTTCTGCAGAGCCTGAGGCAGTCGCCGATTTCACACGCCTACGGTGGCCTCCTGCCGAGGCTCGGACAGGACGCTTTGAGGAAGCACGCGATCTCCGATCAGGTGAAGTACGCCATCCTGGCGCAACAGCTGAAGGGTAACAAGACGGAGGAGAACGACACCGACGAGGAGCTGGTGATCGACGAGGaagaagcagcagcagccgcagcgGCGCGGGAGCCCACCGAGAGGACTCTGAGCCTGCTGAGGGGCAAACTCGAGGCCAATCTCGAGTCCAGAGCCAGCGAGAGCAGCGACGCCGTCGCTCATCCGGAGGAGGGCGCGAGCGAGGCCATCAAGCGCGAGGCCGAGGAGGCCGACGAGGAGGAGCCAGCGAGCGAAGCTCGAGACACGAAGAGGGAGAGCACCTCCAGCGACCGGGACGACGAGTCCCTCGCCAAGCGACACGAGGCGAGCGTGAAGGAGGAAGCGCGCGACGCCGAGGGCGAGGACCTCGCCAGCGTCTCCGAGATCCTGGACAACGCCAGCCAGCAGTACCAGCAGTTCCAGTCGCAGTACATGAGCGACGAGGAGGGCCTGGTCGCCTCCACGAGCGACTGCAACCAGTCCGGCAGCGACGAGAAATCCGACTCCGTGAACTCCGCCAACTCCGGCTCCTCCTCCGTATCCCGCAAGAAGCGCAAGAAGATGAAGAAGGTGAAGAAGatgatgaagaagaagaagaacaaGTCGGCGTACTCGATGGCGCCCAACCGCGTCATCTGCCCGTACTGCGAGCGGCCGTTCCCCTGGACCTCGTCGCTGCGCCGCCACATCCTCACGCACACCGGCCAGAAGCCCTACCGCTGCGAGCACTGCAGCCTCCTATTCACCACCAAGTCGAACTGCGACCGCCACCTGCTCAGAAAGCACAAGGCCAAGGCGAACAAAGTGCGCCGCGCCCGCAGCACCTCGTCGCCCGAACTCCAGGAGGCCCCGGCGAGCCTCGTCGCGCCCATCCCCAGCAGCATACCCGCCGTCAGCAACGGCAtgtccgccgccgccgccgccgcggccgccaACCAGTTCTCCATGCGCAACGTGCCCGAGAGGCCGTACAAGTGCAACCAGTGCCCCAGCTCGACCTTCTCCACCCTGGGCAACCTCAAGAAGCACCGCTCGCAGAAGCACCCGCGCAGCTTCAACAACTCCAAGTCCAGTCCCGGCTCGCCCTCCAGCGAGCACCAGAGCAGCCCGCAGGACTGCAGCCACAACGACAGCCCCCAGGACTCGCCCAGGCAGGACTGCCCGCAGGACTCGCCGCGGCGGAACTCCACCGGCGCCGCGAAGAACGAGCAGAGCGACCACGAGAGCCAGTCCTCCGGGCTCTCCGAGCACGCCTTGGAGCAGCAGCACCAGGCCGAGGTCGCCAAGCTGGCCAGCCTGAACGGCGCGATCGACGCCGCCAAGTCCAGGAGGACGTCGCCCAGAGCTTCGCCGGGCCCGGGTAACAACGAGACGCCCTTCAAGTGCCACCTCTGCGACAGCGGATTCGCCGAGCGGCAGGACTGCCTGGACCATCTCAAGGACAATCACGAGCGATCCTACGAGATGCTCGTCGCCAAGGGCGCCCTCGACATGGACATCGACGCTCAGGATGAGCCCATGCCGCCCGTGCCGCCGCCCAGCGACGGCGAGGAGAGACGCGGCAGGTTCCCCGACTACAGCAATCGAAAGGTAAATACCGTCTGA
Protein Sequence: MLAVTAETGPDQRDGRSESQTDVASSPVVEQPEGSHPCPACPLVLPSSRELTTHLRGHNSPRGSTDSGEEADYACGVCRKVLSSASSLDRHVLVHSGERPFKCKHCEMAFTTNGNMNRHLRTAHCSSSPGQHSCTDSDGSSDSERPRTTGSNHIHEEYNNNEVAAERKSPTLKRKCPDYADEAESQQQRRHKILLETYAEVDGRYAGGYSCAVCGRGDFTSGGQLEAHMERQHPESQPRCEPCNQVFKSHRAFNLHRYVSHCREPESPRSLRNSVVGFNDLTFVDFSAVKFPAIARAACERALHRPASGETPRYQCSKCLRAFPCRSALDAHETDCGLLPSAEHRAHGPEDQSLRDDFFAGLDLQNKAALAEAKEGKDLADIQSIISVTSGPILQSFSRSDAGTPDNCKALSRQGFGSSGSSGTPSSECLDEEGQEMFAAEFRKMKLKGEFPCRLCKAVFPNLRALKGHNRAHMGVPAGLPYPCNMCPYSSTDKATLVRHLRSHNGDRPYECSICNYAFTTKANCERHVRNRHGKLSREEIKSVLIYHPSEDSANDAAGLDGGSPRPGLARDEVRKALVYPGEREELSQAHYPTAEIRVKDEAKLRQPALAGLGLGLPGYDKADLFPRPLELAAAEQQPKSQHEDDLDSRSSAGSVSLVSETKSEGQQRVQARPIDLKKPSPEEPPAEQPAAHGEDAPLDLSMDVLDLSRKANAEAAAAAAAAAVAAAKERENDEAYAAADPSHKQNNFYSPTNQLLLTQALLKANQAQPCSLERLYANAQMLYQNLGSFSAVGAGILQPYLFGPHLFGQEFAMKDRLQKGLVRGLQTSGGSLVEPTASGPSYAPAFPHARTDQPDYLRQQSVAPGPSRDNHDSASSANSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCNAKFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPANPPTLLQSLRQSPISHAYGGLLPRLGQDALRKHAISDQVKYAILAQQLKGNKTEENDTDEELVIDEEEAAAAAAAREPTERTLSLLRGKLEANLESRASESSDAVAHPEEGASEAIKREAEEADEEEPASEARDTKRESTSSDRDDESLAKRHEASVKEEARDAEGEDLASVSEILDNASQQYQQFQSQYMSDEEGLVASTSDCNQSGSDEKSDSVNSANSGSSSVSRKKRKKMKKVKKMMKKKKNKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYRCEHCSLLFTTKSNCDRHLLRKHKAKANKVRRARSTSSPELQEAPASLVAPIPSSIPAVSNGMSAAAAAAAANQFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSQKHPRSFNNSKSSPGSPSSEHQSSPQDCSHNDSPQDSPRQDCPQDSPRRNSTGAAKNEQSDHESQSSGLSEHALEQQHQAEVAKLASLNGAIDAAKSRRTSPRASPGPGNNETPFKCHLCDSGFAERQDCLDHLKDNHERSYEMLVAKGALDMDIDAQDEPMPPVPPPSDGEERRGRFPDYSNRKVNTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00714624;
90% Identity: iTF_01380822; iTF_00713852; iTF_00714624;
80% Identity: -