Basic Information

Insect: Sycophila quercilanae
Gene Symbol: Prdm15
Assembly: GCA_035582995.1
Location: JAWWEP010000001.1:8234772-8237164[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.6e-06 0.00029 21.8 2.1 1 23 312 334 312 334 0.98

2 12 3.2e-05 0.0036 18.4 5.3 1 23 338 360 338 360 0.98

3 12 0.00032 0.036 15.2 1.0 1 23 365 387 365 387 0.96

4 12 0.00013 0.015 16.4 2.2 1 23 439 461 439 461 0.97

5 12 0.00088 0.1 13.9 1.3 1 23 466 488 466 488 0.97

6 12 0.00012 0.014 16.6 1.4 1 23 537 559 537 559 0.98

7 12 0.00017 0.019 16.1 2.4 2 23 567 588 567 588 0.97

8 12 1.2e-06 0.00013 22.9 2.1 1 23 599 621 599 621 0.96

9 12 0.00027 0.03 15.5 1.6 1 23 627 649 627 649 0.97

10 12 0.00019 0.022 16.0 0.7 1 23 655 677 655 677 0.98

11 12 1.1e-05 0.0012 19.9 4.5 1 23 683 705 683 705 0.98

12 12 0.00018 0.021 16.0 0.3 1 22 711 732 711 732 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.6e-06	0.00029	21.8	2.1	1	23	312	334	312	334	0.98
2	12	3.2e-05	0.0036	18.4	5.3	1	23	338	360	338	360	0.98
3	12	0.00032	0.036	15.2	1.0	1	23	365	387	365	387	0.96
4	12	0.00013	0.015	16.4	2.2	1	23	439	461	439	461	0.97
5	12	0.00088	0.1	13.9	1.3	1	23	466	488	466	488	0.97
6	12	0.00012	0.014	16.6	1.4	1	23	537	559	537	559	0.98
7	12	0.00017	0.019	16.1	2.4	2	23	567	588	567	588	0.97
8	12	1.2e-06	0.00013	22.9	2.1	1	23	599	621	599	621	0.96
9	12	0.00027	0.03	15.5	1.6	1	23	627	649	627	649	0.97
10	12	0.00019	0.022	16.0	0.7	1	23	655	677	655	677	0.98
11	12	1.1e-05	0.0012	19.9	4.5	1	23	683	705	683	705	0.98
12	12	0.00018	0.021	16.0	0.3	1	22	711	732	711	732	0.95

Sequence Information

Coding Sequence: ATGGCAATAAATAATGGTTATTTTGTTATGCCAATGAACATGGATAATGTGTGCAGAATTTGTTTGCAAGAGAATGCAAACTTATCACCTATTTTCTGCGATGGGCAAGAAGACGAGAATTTGTCAGATTTGCCGCAAAAAATTCAAGTCTGTGGAGCAGTGGAGTGTAACGAGCAGGATGGATTGCCGACTATGATCTGCGATGTTTGTACCTACAAAGCAAGCATCGCACATGAATTCAGACAACTTTGCCAACATTCAGATGCTAGACTACgactttattataataaacctGCTAAGTATAGTGCCACTgATTCTGGAACACAGACTGATGTACAATCCCaggtttttttatcaaaaactaCTGAAgaattacaaaacaattattttgtaaaacaagAAGCAATAAATACTCAACAGTTTCATAATACATTATCAAATGATGAGTACAACCCTGAAGAGCAGCCTAATACAGTTGTCACATCAATAGAATCTGATATGCCTTCAGTAACTGTGCCGATGTCCAGTGACGAGGAGAAGCTCTTCAATTGCCACCTTGATTTTGAAGAGCAGCCCAAGGATATCAGTAAAGATACCGAAGTAGTCTGTGAAGTATCCTGTGATTCTGAAACAGTAACATGTACACAAGAATTAATTCCAGTTTccacaaatttaattgataatgttTGTACTATAGAAGCAGATATTACTGATAATGAAAATGGAGTTAAAAATGATGTCAGTTACTTCACTTACATTACAAAAGAAGATGAATTGATGAGAGACAATAGTAGCAGCTTAGAAAAACAAGTATCGGcagaagaaaaatcaaaagtccAACCAAATAATTCCTTTGATACTGAAGAAGTGGAAGGTGATTCCACCTCCTATTTTGAAACGGATAATACCACTCAGGGTCAGGAGgaagtaaaattcaaatgtgaCATTTGtcaaaaagtttacaataCTCAAAAAGGCTTAAAAAAACATCAGCAGAATCACGAAAAACGGTACAAGTGCAATGTCTGCTCTAAAAGATtctgtaaattgaaaaatctggAGAGGCATAAAAATGTTCACATATTGAAGCCGCATGCCTGTCAGCTGTGTTATGCCAGTTTTTCCAAGCCTGAAAGTCTCGCCAAACATTTGAAATCCCACTCTGATAAAGCCAACGACATCAGTAAACCTACGAGCACAGACaacgaaaaagaagaagcggaAATGAAAGTAACTCCGAAACACGAGGAAGATTCGGATGACGACGGCGGAAACTTAAACGAGTCCGATGAATTCGAGAATGCACCCGAGCTATTCAAATGCGACGAGTGCGGTCAGTATTGCTCCTCcatgaagaatttaaaacgTCACGCCCTCATCCACGGAGAGCGAAAGTACTCCTGCACAGTGTGCAAAAAGTGGTTTTTCCGACCAGACACCTTGAAGAAGCACGCCGAGAGACACGGCCATGGCCTTCTCGACAACCTGTCGGACGATAACAAATTGTACGATTCTGACGACGATCCGTTCCCGAACAGCTCGAGCAACGGCGCGACGGACGGCGACGGCGCCAAGAAGGACGACAGCGGCGACGAGGACAACGGCGACTACAAGTGCCAGCACTGCGACAAAGTGATGGCCTCGAAGAAGGGTCTACGCAGGCACGTGGCCATGCACAAGCCTAAACCCGAGCCGGCGGTATGCGAAATCTGCAAGAAGGTGTGCACGAGCCGGGCTCGGCTCACCATCCACCAGAAGACTCACAACAAGCCGAAGGAGAAGGTGCCGCGCGAGTACCTCTGCCACATCTGCAGCAAAGTGTACCCGAGCAACTCGTCGCTGACTTACCACATGCGCACCCACACGGGCGTCAAGCCCCACGTCTGCAAGACCTGCAACAGCGGCTTCACCACGACCACCAGCCTGGCGAACCATATTCGCATCCACACCGGTGACAAGCCCTTCGTCTGTCACGTGTGCAGCGCGGCCTTCGCCGTGAGCTCGGCCTTCCGCCGGCACCTTACCCGTCACACAGGTGAAGCCAACTATCACTGTAAGACCTGCGGCAAGGCCTTCAAACGGCTCAGCACCCTCAAGGAGCACACTTACACGCATTCCGGGGAGAAGCCTTACATCTGCAAGACCTGCGGCGCGGCCTACAGCCACAGCGGCAGTCTCTTCGCTCATCAGAAACGCTGCCGGGTGCAGTACACCGAGGTGGTGGTGGAGGATCATCATCACACTATGGCTCATCATATACACGTTAATAATGTGCAGTCCGCGGTGCGGTCGCTTGCTGTGATAGGCCAAATGTTTTGA
Protein Sequence: MAINNGYFVMPMNMDNVCRICLQENANLSPIFCDGQEDENLSDLPQKIQVCGAVECNEQDGLPTMICDVCTYKASIAHEFRQLCQHSDARLRLYYNKPAKYSATDSGTQTDVQSQVFLSKTTEELQNNYFVKQEAINTQQFHNTLSNDEYNPEEQPNTVVTSIESDMPSVTVPMSSDEEKLFNCHLDFEEQPKDISKDTEVVCEVSCDSETVTCTQELIPVSTNLIDNVCTIEADITDNENGVKNDVSYFTYITKEDELMRDNSSSLEKQVSAEEKSKVQPNNSFDTEEVEGDSTSYFETDNTTQGQEEVKFKCDICQKVYNTQKGLKKHQQNHEKRYKCNVCSKRFCKLKNLERHKNVHILKPHACQLCYASFSKPESLAKHLKSHSDKANDISKPTSTDNEKEEAEMKVTPKHEEDSDDDGGNLNESDEFENAPELFKCDECGQYCSSMKNLKRHALIHGERKYSCTVCKKWFFRPDTLKKHAERHGHGLLDNLSDDNKLYDSDDDPFPNSSSNGATDGDGAKKDDSGDEDNGDYKCQHCDKVMASKKGLRRHVAMHKPKPEPAVCEICKKVCTSRARLTIHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYHCKTCGKAFKRLSTLKEHTYTHSGEKPYICKTCGAAYSHSGSLFAHQKRCRVQYTEVVVEDHHHTMAHHIHVNNVQSAVRSLAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00713825; iTF_01381525; iTF_00713112; iTF_00714587;
90% Identity: iTF_01381525;
80% Identity: -