Basic Information

Insect: Sycophila texana
Gene Symbol: Prdm15
Assembly: GCA_035582955.1
Location: JAWWEN010000001.1:10464974-10467363[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 7.4e-06 0.00085 20.4 1.6 1 23 312 334 312 334 0.98

2 12 1.6e-05 0.0018 19.4 4.2 1 23 338 360 338 360 0.98

3 12 0.00033 0.038 15.2 1.0 1 23 365 387 365 387 0.96

4 12 0.00014 0.016 16.4 2.2 1 23 438 460 438 460 0.97

5 12 0.00091 0.1 13.9 1.3 1 23 465 487 465 487 0.97

6 12 0.00013 0.015 16.6 1.4 1 23 536 558 536 558 0.98

7 12 0.00027 0.031 15.5 1.5 2 23 566 587 566 587 0.97

8 12 1.2e-06 0.00014 22.9 2.1 1 23 598 620 598 620 0.96

9 12 0.00028 0.032 15.5 1.6 1 23 626 648 626 648 0.97

10 12 0.0002 0.023 16.0 0.7 1 23 654 676 654 676 0.98

11 12 1.1e-05 0.0013 19.9 4.5 1 23 682 704 682 704 0.98

12 12 0.0001 0.012 16.8 0.3 1 22 710 731 710 731 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	7.4e-06	0.00085	20.4	1.6	1	23	312	334	312	334	0.98
2	12	1.6e-05	0.0018	19.4	4.2	1	23	338	360	338	360	0.98
3	12	0.00033	0.038	15.2	1.0	1	23	365	387	365	387	0.96
4	12	0.00014	0.016	16.4	2.2	1	23	438	460	438	460	0.97
5	12	0.00091	0.1	13.9	1.3	1	23	465	487	465	487	0.97
6	12	0.00013	0.015	16.6	1.4	1	23	536	558	536	558	0.98
7	12	0.00027	0.031	15.5	1.5	2	23	566	587	566	587	0.97
8	12	1.2e-06	0.00014	22.9	2.1	1	23	598	620	598	620	0.96
9	12	0.00028	0.032	15.5	1.6	1	23	626	648	626	648	0.97
10	12	0.0002	0.023	16.0	0.7	1	23	654	676	654	676	0.98
11	12	1.1e-05	0.0013	19.9	4.5	1	23	682	704	682	704	0.98
12	12	0.0001	0.012	16.8	0.3	1	22	710	731	710	731	0.96

Sequence Information

Coding Sequence: ATGGCAATAAATAATGGTTATTTTGTTATGCCAATGAACATGGATAATGTGTGCAGAATTTGTTTGCAAGAGAATGCAAACTTATCACCTATTTTCTGCGATGGGCAAGAAGACGAGAATTTGTCAGATTTGCCGCAAAAAATTCAAGTCTGTGGAGCAGTGGAGTGTAACGAGCAGGATGGATTGCCGACTATGATCTGCGATGTTTGTACCTACAAAGCAAGCATCGCACATGAATTCAGACAACTTTGCCAACATTCAGATGCTAGACTACgactttattataataaacctGCTAAGTATAGTGCCACTgATTCTGGAACACAGACTGATGTACAATCGCAggtttttttatcaaaaactaCTGAAGaattacaaaacaattattttgtaaaacaagAAGCAATAAATACTCAACAGTTTCATAATACATTATCAAATGATGAGTACAACCCTGAAGAGCAGCCTAATACAGTTGTCACATCAATAGAATCTGCTATGCCTTCAGTAACTGTGCCGATGTCAAGTGACGAGGATAAGCTCTTCAATTGCCACCTTGATTTTGAAGAGCAGCCCAAGGATATCAGTAAAGATACCGAAGTAGTCTGTGAAGTACCCTGTGATTCTGAAACAGTAACATGTACACAAGAATTAATTCCAGTTTccacaaatttaattgataatgttTGTACTATAGAAGCAGATATTACTGATAATGAAAATGGAGTTAAAAATGATGTCAGTTACTTCACTTACATTACAAAAGAAGATGAATTGATGAGAGACAATAGTAGCAGCTTAGAAAAACAAGTATCGGcagaagaaaaatcaaaagtccAACCAAATAATTCCTTTGATACTGAAGAAGTGGAAGGTGATTCCACCTCCTATTTTGAAACGGATAATACCACTCAGGATCAggaggaaataaaattcaaatgtgaCATTTGtcaaaaagtttacaataCTGAAAAAGGCTTAAAAAAACATCAGCAGAATCACGAAAAACGGTACAAGTGCAATGTCTGCTCTAAAAGATTCTGTAAATTGGAAAATCTGGAGAGGCATAAAAATGTTCACATATTGAAGCCGCATGCCTGTCAGCTGTGTTATGCCAGTTTTTCCAAGCCTGAAAGTCTCGCCAAACATTTGAAATCCCACTCTGATAAAGCCAACGACGTCAGTAAACCTACGAGCACAGACaacgaaaaagaagaagcggaAATGAAAGTAACTCTGAAACACGAGGAAGATTCGGATGACGGCGGAAACTTAAACGAGCCCGATGGATTCGAGAATGCACCCGAGCTATTCAAATGCGACGAGTGCGGTCAGTATTGCTCCTCcatgaagaatttaaaacgTCACGCCCTCATCCACGGAGAGCGAAAGTACTCCTGCACAGTGTGCAAAAAGTGGTTTTTCCGACCAGACACCTTGAAGAAGCACGCCGAGAGACACGGCCATGGCCTTCTCGACAACCTGTCGGACGATAACAAATTGTACGATTCTGACGACGATCCGTTCCCGAACAGCTCGAGCAACGGCGCGACGGACGGCGACGGCGCCAAGAAGGACGACAGCGGCGACGAGGACAACGGCGACTACAAGTGCCAGCACTGCGACAAAGTGATGGCCTCGAAGAAGGGTCTACGCAGGCACGTGGCCATGCACAAGCCTAAACCCGAGCCGGCGGTATGCGAAATCTGCAAGAAGGTGTGCGCGAGCCGGGCCCGGCTCACCATCCACCAGAAGACTCACAACAAGCCGAAGGAGAAGGTGCCGCGCGAGTACCTCTGCCACATCTGCAGCAAAGTGTACCCGAGCAACTCGTCGCTGACTTACCACATGCGCACCCACACGGGCGTCAAGCCCCACGTCTGCAAGACCTGCAACAGCGGCTTCACCACGACCACCAGCCTGGCGAACCATATTCGCATCCACACCGGTGACAAGCCCTTCGTCTGCCACGTGTGCAGCGCGGCCTTCGCCGTGAGCTCGGCCTTCCGCCGGCACCTTACCCGTCACACAGGTGAAGCCAACTATCACTGTAAGACCTGCGGCAAGGCCTTCAAACGGCTCAGCACCCTCAAGGAGCACACTTACACGCATTCCGGGGAGAAGCCTTACGTCTGCAAGACCTGCGGCGCGGCCTACAGCCACAGCGGCAGTCTCTTCGCTCATCAGAAACGCTGCCGGGTGCAGTACACCGAGGTGGTGGTGGAGGATCATCATCACACTATGGCTCATCATATACACGTTAATAATGTGCAGTCCGCGGTGCGGTCGCTTGCTGTGATAGGCCAAATGTTTTGA
Protein Sequence: MAINNGYFVMPMNMDNVCRICLQENANLSPIFCDGQEDENLSDLPQKIQVCGAVECNEQDGLPTMICDVCTYKASIAHEFRQLCQHSDARLRLYYNKPAKYSATDSGTQTDVQSQVFLSKTTEELQNNYFVKQEAINTQQFHNTLSNDEYNPEEQPNTVVTSIESAMPSVTVPMSSDEDKLFNCHLDFEEQPKDISKDTEVVCEVPCDSETVTCTQELIPVSTNLIDNVCTIEADITDNENGVKNDVSYFTYITKEDELMRDNSSSLEKQVSAEEKSKVQPNNSFDTEEVEGDSTSYFETDNTTQDQEEIKFKCDICQKVYNTEKGLKKHQQNHEKRYKCNVCSKRFCKLENLERHKNVHILKPHACQLCYASFSKPESLAKHLKSHSDKANDVSKPTSTDNEKEEAEMKVTLKHEEDSDDGGNLNEPDGFENAPELFKCDECGQYCSSMKNLKRHALIHGERKYSCTVCKKWFFRPDTLKKHAERHGHGLLDNLSDDNKLYDSDDDPFPNSSSNGATDGDGAKKDDSGDEDNGDYKCQHCDKVMASKKGLRRHVAMHKPKPEPAVCEICKKVCASRARLTIHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYHCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYTEVVVEDHHHTMAHHIHVNNVQSAVRSLAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01380780;
90% Identity: iTF_01380780;
80% Identity: -