Basic Information

Insect: Eurytoma californica
Gene Symbol: Prdm15
Assembly: GCA_035586675.1
Location: JAXIUT010000001.1:11091202-11093585[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4e-07 5.2e-05 24.5 1.0 1 23 308 330 308 330 0.98

2 12 3e-05 0.0039 18.6 5.1 1 23 334 356 334 356 0.98

3 12 0.025 3.2 9.4 5.1 1 21 361 381 361 383 0.93

4 12 5.8e-05 0.0075 17.7 2.1 1 23 433 455 433 455 0.97

5 12 0.00097 0.12 13.9 1.3 1 23 460 482 460 482 0.97

6 12 0.00013 0.017 16.6 1.4 1 23 531 553 531 553 0.98

7 12 0.00051 0.065 14.8 1.5 2 23 561 582 561 582 0.97

8 12 1.3e-06 0.00017 22.9 2.1 1 23 593 615 593 615 0.96

9 12 0.00016 0.021 16.3 2.1 1 23 621 643 621 643 0.98

10 12 0.00021 0.027 16.0 0.7 1 23 649 671 649 671 0.98

11 12 1.2e-05 0.0015 19.9 4.5 1 23 677 699 677 699 0.98

12 12 0.00011 0.014 16.8 0.3 1 22 705 726 705 726 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4e-07	5.2e-05	24.5	1.0	1	23	308	330	308	330	0.98
2	12	3e-05	0.0039	18.6	5.1	1	23	334	356	334	356	0.98
3	12	0.025	3.2	9.4	5.1	1	21	361	381	361	383	0.93
4	12	5.8e-05	0.0075	17.7	2.1	1	23	433	455	433	455	0.97
5	12	0.00097	0.12	13.9	1.3	1	23	460	482	460	482	0.97
6	12	0.00013	0.017	16.6	1.4	1	23	531	553	531	553	0.98
7	12	0.00051	0.065	14.8	1.5	2	23	561	582	561	582	0.97
8	12	1.3e-06	0.00017	22.9	2.1	1	23	593	615	593	615	0.96
9	12	0.00016	0.021	16.3	2.1	1	23	621	643	621	643	0.98
10	12	0.00021	0.027	16.0	0.7	1	23	649	671	649	671	0.98
11	12	1.2e-05	0.0015	19.9	4.5	1	23	677	699	677	699	0.98
12	12	0.00011	0.014	16.8	0.3	1	22	705	726	705	726	0.96

Sequence Information

Coding Sequence: ATGGCGATAAACAATAGTTATTTTGTCATGCCAATGAACATGGATAATGTGTGCAGAATCTGTTTGCAGGAGAATGCAAACTTATCGCCTATTTTCTGTAACGGTCAAGATGACGACAATTTGTCAGATTTGcctcaaaaaattcaagtctGTGGAGCAGTGGAATGTAGCGAGCAGGATGGTTTGCCCACTATGATCTGCGATGTTTGTACCTACAAGGCAAGCATTGCCCACGAATTCAGGCAACTTTGCCAACATTCTGATGCTAGACTACgactttattataataagcCTGCTAAATATAGTGCCACTgaTTCTGGAACACAGACTGATGTACAAACACAGgttcttttatcaaaaactgctgaagaattacaaaacaattattttgtaaaagaagaAGCAATAAATACTCAACAGTTTCATAATTCATTGTCAAATGAAGCTTATAATCCTGAAGGTCAGCCTAATACAGTTGTCACATCGATAGAATCAGCCATGCCCTCTGTAAATGTGCCAATGTCAAGCGAAGAGGAAAAGCTCTTCAATTGCCATCTTGATTTTGAGGAACAGCCCAAGGATATCAGTAAAGATACTGAAGTGGTCTGTGAAGTACCCTGTGATACTGAGACAGTAACGTGTACACAAGAATTAATTCCAGtttctacaaatttaattgataatgttTGTACTATAGAAGCAGAGATTGTTAGCAATGAAAATGGAGTAAAAAATGATGTCAGTTACTTCACTTACATTACAAAAGAAGATGAAATGATGAGAGATGATAGTAACTTAGAAAAACAAGAAGAAGCGGAAGAAAAGTCAAAGGTACCACAGAGTAATACCTTTGAAAGTGAAGAAGTGGGAGGTGCTTACTTTGAAGCAGATAATGACACTCAGGGTCCAgaggaaacaaaatttaaatgcgaaATTTGCCCAAAAGTGTACACCACACAGAAGGGCTTAAAAAAGCATCAACTGAGTCACGAAAAACAGCACAAGTGTGAAATCTGTTCAAAAAGTTTCTGTAAATTGGAGAATCTGGAAAGgcataaaaatgttcacaCTGTGAAGCCGCACGCCTGTCAACTCTGTCACGCCAGTTTTTCCAAGTCCGAAAGTCTCGCCAAACATTTGAAATGTCACTCCGAAAAAGCGAGTGAAGTTGGTAAACTAACGGCCATCGAAAACGAGAAAGAAATGGACATGAAAATCATTCCAAAGAACGAGGAAGACTCGGACGACGACGGAAACTTAAACGAGCCCGACGGCTTCGAGAACGCACCGGAGCTGTTCAAATGCGACGAGTGCGGCCAGTACTGCTCCTCGCTGAAGAATTTGAAGCGTCACGCCCTCATCCACGGGGAGAGAAAGTACTCCTGCACGGTGTGCAAAAAGTGGTTTTTTCGACCGGACACCCTGAAGAAGCACGCCGAGAGGCACGGCCACGGCCTCCTGGACAACCTGTCGGACGATAACAAGCTGTACGACTCGGACGACGATCCGTTCCCCAACAGCTCGAGCAACGGCGCGACGGACGGCGACGGGGCTAAGAAGGAGGAGAGCGGCGACGAAGGCAACGGCGACTACAAGTGCCAGCACTGCGACAAGGTGATGGCGTCGAAGAAGGGTCTGCGCAGGCACGTGGCCATGCACAAGCCTAAGCCCGAGCCGGCCGTCTGCGAGGTGTGCAAGAAGGTTTGCGCGAGCCGGGCTCGCCTCACCATCCACCAGAAGACCCACAACAAGCCGAAGGAGAAGGTGCCGCGCGAGTACCTCTGCCACATCTGCAGCAAGGTGTATCCGAGCAACTCGTCGCTGACCTATCACATGCGCACCCACACGGGCGTCAAGCCCCACGTGTGTAAGACCTGCAACAGCGGCTTCTCCACGACCACCAGCCTGGCCAATCACATACGCACCCACACGGGCGACAAGCCCTTCGTCTGCCACGTGTGCAGCGCGGCCTTCGCCGTGAGCTCGGCCTTCCGCCGGCACCTGACTCGCCACACCGGCGAGGCCAACTACCACTGCAAGACCTGCGGTAAGGCATTCAAGCGACTGAGTACCCTGAAGGAACACACCTACACGCATTCCGGCGAGAAGCCCTACGTGTGCAAGACCTGCGGCGCGGCCTACAGCCACAGCGGCAGCCTCTTCGCCCACCAGAAACGCTGCAGGGTGCAGTACACCGAGGTGGTGGTGGAGGATCATCATCACACTATGGCACACCACATACACGTTAACAATGTGCAATCCGCGGTGCGCTCGCTTGCTGTGATAGGCCAAATGTTTTGA
Protein Sequence: MAINNSYFVMPMNMDNVCRICLQENANLSPIFCNGQDDDNLSDLPQKIQVCGAVECSEQDGLPTMICDVCTYKASIAHEFRQLCQHSDARLRLYYNKPAKYSATDSGTQTDVQTQVLLSKTAEELQNNYFVKEEAINTQQFHNSLSNEAYNPEGQPNTVVTSIESAMPSVNVPMSSEEEKLFNCHLDFEEQPKDISKDTEVVCEVPCDTETVTCTQELIPVSTNLIDNVCTIEAEIVSNENGVKNDVSYFTYITKEDEMMRDDSNLEKQEEAEEKSKVPQSNTFESEEVGGAYFEADNDTQGPEETKFKCEICPKVYTTQKGLKKHQLSHEKQHKCEICSKSFCKLENLERHKNVHTVKPHACQLCHASFSKSESLAKHLKCHSEKASEVGKLTAIENEKEMDMKIIPKNEEDSDDDGNLNEPDGFENAPELFKCDECGQYCSSLKNLKRHALIHGERKYSCTVCKKWFFRPDTLKKHAERHGHGLLDNLSDDNKLYDSDDDPFPNSSSNGATDGDGAKKEESGDEGNGDYKCQHCDKVMASKKGLRRHVAMHKPKPEPAVCEVCKKVCASRARLTIHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFSTTTSLANHIRTHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYHCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYTEVVVEDHHHTMAHHIHVNNVQSAVRSLAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01380780;
90% Identity: iTF_00713112; iTF_00713825;
80% Identity: -