Ssin025663.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- sip1
- Assembly
- GCA_954870665.1
- Location
- OX940879.1:105849852-105852783[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.7e-94 1.8e-89 301.2 14.0 2 275 397 662 396 662 0.98 2 2 0.062 1.3e+03 -0.1 0.0 158 270 675 702 667 713 0.54
Sequence Information
- Coding Sequence
- ATGTCTGACAACGAATATGAACGTTTTGAAATCACAGACTATGACATTGAGAACGAATTTAATCCAAATCGCGGAAGAAGGCGGCAAACGAAACATCAGCAAATTTAtgGGATTTGGGCTGACGACAGTGAAGCTGAAGAAGAGGAGGAGCTAAGAGGCAGAAGGAAGGGTGGACGAAAAGCTAAAGACTATTCTGCTCCGGTGAACTTTGTTGCCGGCGGAATTCAACAGGCGGGAAAGCAGAAGGACGAGGAAGACAAAGAACCGGATAATGGACAAATTACTGACGAAGaagaAGATCGTCCAGCATTTGGACGGAAAGATGTCTCAGCGACATCTTCAGAATCTGAAGAGGAGGAAGCAGAAATGCGTCCACGTATGTCAGGATTCGGAAATGGTGGATCGCAGTACAAAAAACAAATGCCAACGTCAGCGGGTCCGGCAAAACTTGCATCATGGGAGCAACATACAAAAGGTATAGGTGCGAAACTTCTGTTGCAAATGGGCTACGAACCAGGCAAAGGATTGGGAAAAGATCTGCAGGGTATCTCACGACCTGTCGAAGCTCATATGCGTAAAGGGCGTGGAGCTATTGGAGCATATGGTCCCGAAGCGCCAGCAAGTGTCCCGGGCCAGAAGACAGTCGTTATCGATGAAGATGAACGCGAGGCGAAAGAGTTCAAAGAGAAGATGTCACGATGGCGAAAGGATGGCAACGAAGAGAAGAATAAAAAGAGTCGTTATTACTATCGTAGCGTTCAGGAAGTCATTGAAAAGGGAAAGAAGACGAGTACGATATTGGGAGATCGGTTTAGCAACAAACTCGGCAATGTGCCCGTGATCGATATGACTGGTCCGGAGAAACGTGTTTTAAGCGGCTACCATGCAATTGGACAAGCGAAAATCTTCGATGACGACATTTACGAGCGTCGTCCTGCTAAAACTTGCACTAATTTCACGTTGCCCGAACTAATGCACAACTTGAATTTGATTGTTGAAATGTGCGAGCAGGAAATCATTTCGATTGATAAATCCGAACGAGAGTCGAACGATCGACAAAAGCAAATAGAAAGTGAGAAGGCAAATCTCGAGGAAATCATTAAGTTGGAAGACAATCATATTTACACATTGGAGAAAGCGTTGTCGCTCGTTGAAGAGTTGACATGTCCTCAGGTGCCTCTGACGCTAGCCAAAGCAAAAAGGACGTTCATGGAGTTACAAACGAACTTTTCAGCCGAATACAAAGAATTCGGACTGGGCGACTTAGCTGCAGGTGTGATTGTTCCTCTGATAAATGCTGCTCTGACCGAGTGGAAACCGTTGGCTGAACCGACACGACATGTGGACACGATTAAGGAATGGAAGGGCATTTTGGATTTACATTTGCCCGAGCGTCGAAACGTTTTCGATCCGTATTCGTCCATAATATGGGCCGGTGTGATTCCAAGCTTCCGAACTGCCGCGGCTGAATGGAATCCGAAACAACACCAGCAAATGGCAGCACTTTTGGATTGCTGGGCTCCCATGTTTCCCACCTGGATTCTGGACAACGTTTTAGAACAACTGATTTTGCCTCGATTGCAACAAGGCGTCCAGAATTGGGATCCGCTTACCGATACAGTCCCAATTCATGTGTGGGTGTTGCCCTGGAGCGCTATATTAGGGCacaaaatggaagaaatgaTATACCCAACGATCAGGGAAAAGTTGGGCAACGCGTTGCTTGCTTGGGTGCCACAGGATCGATCGGCCAGAGCCATGTTGACGCCGTGGAAAGACGCGTTCGGCGAAGCAGAGATGACGAGTTTCCTTTTGAAACATATCATTCCGAAGCTGCAAATCACTCTGAACGAACTTATTATAAATCCGCTCCAACAAGACCTGGAGCTTTGGAATCAAGTGTGGGAGTGGCATGAGTTGATACCAATTGCCCTTATGACGCAACTACTCGACAAGTTCTTCTTCCCGAAATGGATGCAAACGCTTGTCATTTGGCTGAATCAAGCTCCAAATCTAGACCAAATTTCGCGCTGGTATACGGGCTGGAAGAGTTTGTTGAATGAAGAAATATTACAACAGCCAGCGATCAAGGAACATTTCAGACGTGCTCTGGAATTGATGCATCGTGCGACGGCTCCAGCTGCTGAATCTACAACTCCGCCACCACCGCCCCTCACACAAAATGTTGCCCAACCTGCGCAAGATATCAAACCTCCGGCATTGATGGATCTGCAAATCGATCCGCCCGTTCAGCTAGAGTTTAAGGAGCTTGTCTCGCAGCGATGTGCTGAACGAGGTATCATATTTGCCCCGATGCCCGGTAGGCGAGAGTTTGGCAAGCAGGTGTATCGTGTTGGCAAGCTATTTTGCTACATCGATCGGTCAGTGCTTATGGTCAGTGATGGAAATTTTAGCAATTGGACCCCCACATCCTTGGGTTTGATGGTAGAGAGGGCCGCAACGGGCTAA
- Protein Sequence
- MSDNEYERFEITDYDIENEFNPNRGRRRQTKHQQIYGIWADDSEAEEEEELRGRRKGGRKAKDYSAPVNFVAGGIQQAGKQKDEEDKEPDNGQITDEEEDRPAFGRKDVSATSSESEEEEAEMRPRMSGFGNGGSQYKKQMPTSAGPAKLASWEQHTKGIGAKLLLQMGYEPGKGLGKDLQGISRPVEAHMRKGRGAIGAYGPEAPASVPGQKTVVIDEDEREAKEFKEKMSRWRKDGNEEKNKKSRYYYRSVQEVIEKGKKTSTILGDRFSNKLGNVPVIDMTGPEKRVLSGYHAIGQAKIFDDDIYERRPAKTCTNFTLPELMHNLNLIVEMCEQEIISIDKSERESNDRQKQIESEKANLEEIIKLEDNHIYTLEKALSLVEELTCPQVPLTLAKAKRTFMELQTNFSAEYKEFGLGDLAAGVIVPLINAALTEWKPLAEPTRHVDTIKEWKGILDLHLPERRNVFDPYSSIIWAGVIPSFRTAAAEWNPKQHQQMAALLDCWAPMFPTWILDNVLEQLILPRLQQGVQNWDPLTDTVPIHVWVLPWSAILGHKMEEMIYPTIREKLGNALLAWVPQDRSARAMLTPWKDAFGEAEMTSFLLKHIIPKLQITLNELIINPLQQDLELWNQVWEWHELIPIALMTQLLDKFFFPKWMQTLVIWLNQAPNLDQISRWYTGWKSLLNEEILQQPAIKEHFRRALELMHRATAPAAESTTPPPPPLTQNVAQPAQDIKPPALMDLQIDPPVQLEFKELVSQRCAERGIIFAPMPGRREFGKQVYRVGKLFCYIDRSVLMVSDGNFSNWTPTSLGLMVERAATG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01043777; iTF_01088353; iTF_01127413; iTF_00322462;
- 90% Identity
- iTF_01088353;
- 80% Identity
- -