Npan071213.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- sip1
- Assembly
- GCA_963978885.1
- Location
- OZ022266.1:47275510-47283362[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-90 5.5e-86 290.8 11.2 2 275 397 662 396 662 0.98 2 2 0.12 5.1e+03 -1.0 0.1 158 269 675 701 667 715 0.52
Sequence Information
- Coding Sequence
- ATGTCAGATAACGAATATGAACGTTTTGAAATCACCGACTATGATCTCCAGAATGAGTTCAATCCAAATCGTGGTAGGAGACGACAAACAAAACATCAACAAATTTATGGAATCTGGGCTGATGATAGTGATGCTGAAGAGGAAGAAGAGCTATCAGGGCGGCGACGTGGCAGAAAACAAAAGGACTACTCGGCACCGGTCAATTTTGTTGCCGGAGGCATTCAGCAGTCTGGGAAGAAAAAAGACGAGGAGGAAGAAAAGGACGACGATGATAATCAGATAACAGATGAAGAAGAAGATCGACCTGCTAAGGGCCGCAAAGAGGCCAATACATCTTCTGAATCAGAAAGTGATGGCGAAGCCCGTCCCAGTATGTCCACAGGTTTTAGTGGTGCATCACAAACCAGACGTCAGCCACCAGTTTCATCAGGTCCTACGAAACTTGCTTCGTGGGAACAACACACAAAAGGCATCGGGGCGAAGCTTCTACTTCAGATGGGCTACAAGCCGGGGAAAGGTCTTGGCAAAGACCTGCAAGGCATCTCACGGCCAGTCGAGGCGCACATGCGAAAAGGACGTGGAGCAATCGGTGCTTATGGGCCTGAAGCACCAGCTAGCGTTCCTGGACAGAAGGTAAAAGAAGTAATCGACGAAGATGTCCGTGAAACCAAGGAGTTCAAAGAGAAAATGTCTCGCTggaaaaaagacgaaaaaatcgagcaaaaatcaaagcaaaatcgATATTACTATCGCAGCATCCAAGAAGTCATTGAAAAAGGTCGGAAGTCGTCTTCCATTCTTGGAGATCGATTCAGCAACAAACTCGGAAATGTACCCGTCATCGATATGACCGGACCTGAAAAACGGGTCCTGAGTGGGTATCACGCCATTGCGCAAGCGAAAGCCCTCGACGAAGACCTATACGAAAATCGAACTGCTAAGAAGTGTATCAACTTCCAACTGCCCGAGCTGATGCACAATTTGAACCTTATCGTGGAAATGTGCGAACAAGAAATCATTTCGATCGATAAAGCCGAGCGAGAGGCCAACGATCGACAGAAATCACTCGAGCAAGAGAAAGCGAATTTATCGGAAATCATTAAACTCGAAGACAACCACATCTATACGTTGGAGAAGGTATCGGCGCTCGTTGAAGATCTCACTAACCCTAAATTGCCGTTGACTTTATCGCGAGCTCGGAGGACGTTTATGGAATTGAAGACTGGCCACGCGGCGGAGTACAAAGAGTTTGGACTGGGAGACTTGGCAGCTGGTGTTATCGTGCCGCTCGTGAACGCAGAACTGAGCGAATGGAAACCGCTTTTGGAGCCGACGCGTCACATTGAGACGATCAAGGAATGGCGCGGAATCTTGGACATGAACGAGCCAGAGAGGCGCAATGTTTTCGACCCGTACTCATCGATTATATGGGCAGGGGTTATTCCAAGCTTCCGCACAGCTGTGGCCGAATGGAATCCAAAACAACATCAACCAATGGCTGCACTCCTGGATTGTTGGGCTCCTCTGTTCCCAACATGGATTCTGGACAATGTCCTGGAGCAATTGATCCTCCCACGAATACAAAACGCAGTCCAGAGCTGGGACCCACTAACCGACACGATGCCGATTCACGTCTGGGTACTGCCGTGGAGTGCGATCTTGggtaacaaaatcgaagaagcTACGTACCCGATCATCAGAGAGAAACTAGGCAACGCATTACTAGCCTGGACCCCTCAAGATAGATCAGCCAGAGCTATGCTTCTGCCATGGAAGGACGCGTTCGGTGAAGGAGAGATGACTAGTTTCCTTCTGAAACACATCATCCCCAAGCTTCAAATcacattaaatgaattaatcATCAACCCGCTGCAACAAGACTTGGAGCTGTGGAATCAAGTTTGGGAGTGGAACGACCTAATTCCAATACTTCTAATGACGCAGCTGCTCGACAAATTCTTCTTCCCCAAATGGATGCAAACGCTTGTGATTTGGTTGAATCAAGCTCCGAACTTGGACCAGATATCGCGATGGTATACTGGCTGGAAGAGCTTATTCTCCGACGAACTTGTTCAGCAGCCTATCATCAAAGAACATTTTCGTCGTGCCCTGGAACTAATGCATCGTGCGACCAGTGTTGTTACGGAATCATCAACACCACCACCACCGCCAGCACCTCCAATAATTTCCGTAGTACCCGAAGTAAGACCACCTGCACTCATGGACATTCAAATCGATCCGCCGTTGCAATTGGAATTCAAAGAACTTGTATCGCAACGTTGTGCCGAGAGGGGAATTATTTTCGCACCAATGCCAGGAAGACGGGAGTTTGGTAAACAGGTTTATCGAGTCGGAAAACTTTTTTGCTATATAGATCGATCAGTACTTATGGTTAGCGATGGTAATTTCAGCAACTGGACTCCTACATCGTTAGGTCTAATGATAGAAAGAGCCGCTTAG
- Protein Sequence
- MSDNEYERFEITDYDLQNEFNPNRGRRRQTKHQQIYGIWADDSDAEEEEELSGRRRGRKQKDYSAPVNFVAGGIQQSGKKKDEEEEKDDDDNQITDEEEDRPAKGRKEANTSSESESDGEARPSMSTGFSGASQTRRQPPVSSGPTKLASWEQHTKGIGAKLLLQMGYKPGKGLGKDLQGISRPVEAHMRKGRGAIGAYGPEAPASVPGQKVKEVIDEDVRETKEFKEKMSRWKKDEKIEQKSKQNRYYYRSIQEVIEKGRKSSSILGDRFSNKLGNVPVIDMTGPEKRVLSGYHAIAQAKALDEDLYENRTAKKCINFQLPELMHNLNLIVEMCEQEIISIDKAEREANDRQKSLEQEKANLSEIIKLEDNHIYTLEKVSALVEDLTNPKLPLTLSRARRTFMELKTGHAAEYKEFGLGDLAAGVIVPLVNAELSEWKPLLEPTRHIETIKEWRGILDMNEPERRNVFDPYSSIIWAGVIPSFRTAVAEWNPKQHQPMAALLDCWAPLFPTWILDNVLEQLILPRIQNAVQSWDPLTDTMPIHVWVLPWSAILGNKIEEATYPIIREKLGNALLAWTPQDRSARAMLLPWKDAFGEGEMTSFLLKHIIPKLQITLNELIINPLQQDLELWNQVWEWNDLIPILLMTQLLDKFFFPKWMQTLVIWLNQAPNLDQISRWYTGWKSLFSDELVQQPIIKEHFRRALELMHRATSVVTESSTPPPPPAPPIISVVPEVRPPALMDIQIDPPLQLEFKELVSQRCAERGIIFAPMPGRREFGKQVYRVGKLFCYIDRSVLMVSDGNFSNWTPTSLGLMIERAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01375833;
- 90% Identity
- -
- 80% Identity
- -