Ssin016715.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940878.1:112175822-112176361[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.9e-10 1.1e-07 32.6 0.0 1 38 15 52 15 58 0.89
Sequence Information
- Coding Sequence
- atgtcggagtcaaaacctagaaaaaaaagaggtagtACATGGGATGAAGACAGTTTAAGACGTGCCATGGAAGcagtacaaaataataaacttaatacaAATGCTGCAGCGATAAAGTTCAATATTCCAAGACGCACCCTTAGAAACCATATATTGAGCGGTAACAGTGCTAAAATTATTGGGAAGACGACTATTCTCACAAAACAATTAGAACAAGATTTATCGCAGCGAATCATACGGTTTGCAAAACTGGGTATACCACTTACGCCTAAATTTATCAGAAAACaagcctttttattttgtgagaGGTTTAAAATCAAACACTCGTTCAATATGTCAACTAGAATGGCtggacgcaaatggcttaaaatgtttttatctcGAAACCCATcaatatcaaaaagaaaacccCAGTTAATGAATCCAGCTAGAGCTCAGAAAATGAATAAGCCTATTGTTAAACACCACtttgaagaagtgaagaaactCTATGAAGAGTTAGATATTATTGCACATCCAGAACGTCTTAAGAATACTTAg
- Protein Sequence
- MSESKPRKKRGSTWDEDSLRRAMEAVQNNKLNTNAAAIKFNIPRRTLRNHILSGNSAKIIGKTTILTKQLEQDLSQRIIRFAKLGIPLTPKFIRKQAFLFCERFKIKHSFNMSTRMAGRKWLKMFLSRNPSISKRKPQLMNPARAQKMNKPIVKHHFEEVKKLYEELDIIAHPERLKNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932404;
- 90% Identity
- iTF_00008867;
- 80% Identity
- -