Ahol014534.1
Basic Information
- Insect
- Acleris holmiana
- Gene Symbol
- -
- Assembly
- GCA_949316455.1
- Location
- OX438766.1:1398345-1398941[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.2e-10 1.4e-07 32.3 0.0 1 38 15 52 15 58 0.89
Sequence Information
- Coding Sequence
- ATGTCGGAAACAAAACCTAGAAAAAAAAGAGGTAGTACATGGGATGAAGACAGTTTAAGACGTGCCATGGAAGcagtacaaaataataaacttaatacAAATGCTGCAGCGATAAAGTTCAATATTCCAAGACGCACCCTTAGAAACCATATATTGAGCGGTAACAGTGCTAAAATTATTGGGAAGACGACTATTCTCACAAAACAATTAGAAGAAGATTTATCGCAGCGAATCATACGGTTTGCAAAACTGGGTATACCACTTACGCCTAAATTTATCAGAAAACAAGCCTTTTTATTTTGTGAGAGGTTTAAAATCAAACACTCGTTCAATATGTCAACTAGAATGGCTGGACGCAAATggcttaaaatgtttttatctcGAAACCCATCAATATCAAAAAGAAAACCCCAGTTAATGAATCCAGCTAGAGCTCAGAAAATGAATAAGCCTATTGTTAAACACCACTTTGAAGAAGTGAAGAAACTCTATGAAGAGTTAGATATTATTGCACATCCAGAACGTCTGTACAACATGGATGAAAAAGGGTGTCGCATTACGGTCCACAAACAAAATGTAGTTTTAGCTGAAAGGTGA
- Protein Sequence
- MSETKPRKKRGSTWDEDSLRRAMEAVQNNKLNTNAAAIKFNIPRRTLRNHILSGNSAKIIGKTTILTKQLEEDLSQRIIRFAKLGIPLTPKFIRKQAFLFCERFKIKHSFNMSTRMAGRKWLKMFLSRNPSISKRKPQLMNPARAQKMNKPIVKHHFEEVKKLYEELDIIAHPERLYNMDEKGCRITVHKQNVVLAER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932404;
- 90% Identity
- iTF_01208066; iTF_00008868; iTF_01208068; iTF_01375691; iTF_01208054; iTF_01367741; iTF_00205991; iTF_00850631; iTF_00207828; iTF_00932404;
- 80% Identity
- iTF_00008868;