Lmon006418.1
Basic Information
- Insect
- Lymantria monacha
- Gene Symbol
- -
- Assembly
- GCA_905163515.1
- Location
- LR991084.1:21335836-21336402[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.3e-10 2e-07 31.8 0.0 1 37 14 50 14 57 0.89
Sequence Information
- Coding Sequence
- ATGTCAGGTGTAAAACCTAGAAAAAGAGGTAGTACATGGGATGAAGACAGTTTAAGACGTGCCATGGAAGCAGTACAAAACAAGCAACTCAATACAAATGCTGCCGCCTTAAAATTCAATGTTCCAAGACGCACACTTAGAAACCATTTATTAAGCGGTAACACTCCTAAAATTATTGGCAAGACAACAGTTCTCACAAAACAATTAGAAGACTTATCGCAGCGAATTAAACGTTTTGCAAAACTGGGTATACCACTTACCCCTAAATTTATCCGAAAACaagcatttttattttgtgaaagGTTTAAAATCAAGCACTCGTTCAATATGTCAACAAGAATGGTTGGACGCAAATGGCTTAAAATGTTTTTGATTCGAAACCCATCGATATCAAAAAGAAAACCCCAACTAATGAATTTAGCTAGAGACCAAAAAATGAATAAGCCCATTGTGAAACACCATTTTGAAGAAGTGAAGAAACTTTATGAAGAGTTAGACATCATTGCACACCCAGAACGCTTATATAACATGGATGAAAAGGGGTGTCGCATTACGGTCCACAAATAA
- Protein Sequence
- MSGVKPRKRGSTWDEDSLRRAMEAVQNKQLNTNAAALKFNVPRRTLRNHLLSGNTPKIIGKTTVLTKQLEDLSQRIKRFAKLGIPLTPKFIRKQAFLFCERFKIKHSFNMSTRMVGRKWLKMFLIRNPSISKRKPQLMNLARDQKMNKPIVKHHFEEVKKLYEELDIIAHPERLYNMDEKGCRITVHK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00008867; iTF_01083265; iTF_00008868; iTF_00205991; iTF_01375691; iTF_00207828; iTF_01208054;
- 90% Identity
- iTF_00008867;
- 80% Identity
- -