Basic Information

Gene Symbol
-
Assembly
GCA_954870665.1
Location
OX940881.1:15607409-15607906[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 4.8e-11 1.4e-08 35.5 0.1 4 39 20 55 17 60 0.90
2 2 8.3 2.4e+03 -0.5 0.0 13 22 138 148 130 149 0.74

Sequence Information

Coding Sequence
ATGCCTACGTTCTATACCGGAAAACGCATGTCTGGGAGGGGAGAATGGTCTGAACGTAGCTTGGAAAATGCAGCCAGAGCTGTTCAAAGTAAGGAAATGGGAGTTAATGCTGCAGCGAAGTTGTTTGAAATAccgaaaacaacttttaaaagACGCATCAAGCTACAAAGTTTTAGTAAAGGTTCCATGGGAAAAAACTCATTGCtaggagttgaaaatgaaaaaaaaattgtattacacataaaaaaattacaatcgaggGGGTTTACTCCAACCAGAGATTCAGTACGTTCTATGGCTTACTATTTAGCTGAAAACCTGCAATTGGAGCatagtttcaatcatgaaacaaatcAAGCAGGCTACGactatctttcttcttttcttgttcgcaatcctgaactgtccattcggcaatctgaaggtgtgtctattgcgagagcaaaaggtctaaataaaatagatatcAAAGCGTATTTTGACATCTTGACATTTTAA
Protein Sequence
MPTFYTGKRMSGRGEWSERSLENAARAVQSKEMGVNAAAKLFEIPKTTFKRRIKLQSFSKGSMGKNSLLGVENEKKIVLHIKKLQSRGFTPTRDSVRSMAYYLAENLQLEHSFNHETNQAGYDYLSSFLVRNPELSIRQSEGVSIARAKGLNKIDIKAYFDILTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00944148;
90% Identity
iTF_01375657;
80% Identity
-