Msep278574.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068376.1:204755299-204755757[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-09 2.7e-07 34.2 0.0 2 38 18 54 17 60 0.91
Sequence Information
- Coding Sequence
- ATGCctactttttataaaagaaaaggcaCGTCTGGGAGAGGAGAATGGTCTGAAGACAGTTTGAAAAATACAGTCAAAGCTGTTGAGAATAAGGAAATGGGAGTTAATGCTGCAGCAAAAGCGTTTGGCATACCGAAAACCACTTTAAAAAGGCGCCTTAAGTCACAGAGTTTTAATAAAGGTTCCACGGGGAAAAACTCATTGTTAGGAattgaaaacgaaaaaaaaatcgttggtcatattaaaaaattacaatcaagGGGGTTTACTCCAACTAGAGATTCAGTACGTTCCATGGCTTATTATTTAGCAGAAAGCCTgcaattaaaacataattttaatcatGAAACCAAACAAGCAGGCTACGACTGGCTTTCTTCTTTTCTTGTACGCAATCCTGAACTTTCCAGCCGACAATCTGAAGGGGTATCTATTGCAAGAGCGAAGGGCCTGAATTAA
- Protein Sequence
- MPTFYKRKGTSGRGEWSEDSLKNTVKAVENKEMGVNAAAKAFGIPKTTLKRRLKSQSFNKGSTGKNSLLGIENEKKIVGHIKKLQSRGFTPTRDSVRSMAYYLAESLQLKHNFNHETKQAGYDWLSSFLVRNPELSSRQSEGVSIARAKGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00943781; iTF_00943668; iTF_00944149; iTF_00944150; iTF_00944151; iTF_00944152; iTF_00943837; iTF_01375657; iTF_01375673; iTF_00977267; iTF_00902965;
- 90% Identity
- iTF_00943781; iTF_00943668; iTF_00944149; iTF_00944150; iTF_00944151; iTF_00944152; iTF_00943837;
- 80% Identity
- iTF_00944149; iTF_00944150; iTF_00944151; iTF_00944152;