Ssin001608.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940877.1:32293402-32293821[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-12 6.7e-10 39.7 0.1 4 39 20 55 17 60 0.90
Sequence Information
- Coding Sequence
- ATGCCTACGTTCTATACCAATAAACGCATGTCTGGGAGGAGAGAATGGTCTGAGCGTAGCTTGGAAAATGCAGCCAGAGCTGTTCAAAGTAAGGAAATGGGAGTTAATGCTGCAGCGAAGGTGTTTGGAATACCGAAAACAACTTTGAATAGACGCATCAAGCTACAAAGTTTTAGTAAAGGTTTCATGGGAAAAAACTCATTGCtaggagttgaaaatgaaaaaaaaaaaattgtagtacacataaaaaaattacaatcgagAGGGTTTACTCCAACCAGAGACTCAGTACGTTCTATGGCTTACTATTTAGCTGAAAACCTGCAATTGAAGCatagtttcaatcatgaaacaaagcaagcaggctacgactggctttcttcttttcttgttcgcaATCCTGAACTGTCCATTCGGTAA
- Protein Sequence
- MPTFYTNKRMSGRREWSERSLENAARAVQSKEMGVNAAAKVFGIPKTTLNRRIKLQSFSKGFMGKNSLLGVENEKKKIVVHIKKLQSRGFTPTRDSVRSMAYYLAENLQLKHSFNHETKQAGYDWLSSFLVRNPELSIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00944148;
- 90% Identity
- iTF_01375673;
- 80% Identity
- -