Ssin018619.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940878.1:147270316-147278803[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.3e-11 1.8e-08 35.1 0.0 1 38 455 493 455 498 0.91 2 4 6.9e-13 2e-10 41.4 0.1 2 39 510 547 509 550 0.94 3 4 1.3e-18 3.9e-16 59.6 0.0 1 45 564 609 564 609 0.98 4 4 1.7e-17 5e-15 56.1 0.1 1 44 616 660 616 661 0.96
Sequence Information
- Coding Sequence
- ATGGTGATTTCGgGTCTACTCCGAACAgctgaacaattaaaaattaaaggtcTGTGTGAAACGACCGATCAATCCGACGAGTCAACGGCCGATGGTGCATTAATTACAGTGCCAGTATCAGAATCAGTGCAATCCCAACAGTCACAACAACTAACCAGCACACCAAATAGCGTTGGCTCAGCGACAGCCATAAACACAAATCCAATTCGAAAAACTCGAATTCGCAAAAGATCTAAATCACCCGATACAAATGCATCTCTGAACAATACGAACCAACAAACATTCACATCAACTTCGGTTGTTGGTTCAAGTTCATCCAATTCAACGACTCCCAATTTCTCATCAGTAGGGTCAGTGCCAATAACAACTGTTGCCAGTTTCAAATCGGATCAGCACAATCCACACCAACTGCAGCAgcatcaacaacatcaacatcACCATTCGCAGCAACAGCAccatcaacaacaacatcagcaacaccaccaacaacaacagcaacaacatttAGCTGCTGGTACGACCATTGATAGTGGTCAAGATTCGAATTCGAGTTCAGTGAAACcgacaaaaatcatcaaaactgAAGACGTATCGAATAATGGTGGCAGTAGTATTGTCCCAACGAGTGGTACAATTTTAACACAAATTGTTGTATCGCGTGATAAAGATAATAAAACGATGACCAGTCTGGGAATGGGAATTaatGGGGGCCTACTGGGAGTCCCGATGGGATTCCTGGATTTTGCACCGGAGCCACCCGCCCCATCCGCGACGCCCGTCACCGAGCATGTAGACATGTCCTGCACGCCTAGTACTGATACAAGAGACTTATCAAATCCCACCGAAACCCTCGATATAGACAATCACATAGCACAGCATATAATACAACGTTTAGATCAATCGCCAATGGATCAGAtgcatcatcaaacatcgacaCCCGATGAAAATAAGATATCAAaccaaattatacaaaatatcaaaacagaAATTGTCGATAAGCATCAGcaacatcatcaacaacaacaccatcaacagcaacaacaacatcatcaccatcaacaacaccaacagcagcagcaacaacaacagcaaatgCAAGGACAATCACAACAAAGTCATCATCAAGACTTGTCGGGTACAACTGTCATGGAAATAGATCCGAGTAATATAAAACACGAGCCAGCGATGATTATAACACCGGAAATAGTGACAATGATGACTACAGGAAATATGGATCTTTACAATTCTGATACTAGTGAAGATTCTCTTATGATTGCCAATGGGTCGCCAAATGACAACAATGAGCCTCAATACACGAATCTCGATCAGCAAGAAGTCAAAGCGAACGGTCCCAAGACATGGACGCCGGAAGACATGAATTCAGCGCTAGAAGCCTTGAAAAATCATAATATGAGTCTGACAAAAGCATCTGTAACGTATGGTATACCTTCAACAACTTTGTGGCAAAGAGCTCATCGAATGGGCATCGATACACCTAAAAAAGAAGGAACTACCAAATCGTGGAATGAAGAAGCTCTAAATAATGCACTCGAGGCTCTTCGAACCGGTCAAATTTCCGCAAATAAAGCTTCAAAAGCATATGGCATTCCGTCCTCAACATTGTACAAAATTGCACGACGCGAAGGAATACGATTGGCCGCACCATTCAATGCGGCGCCAACAACGTGGACACCCGAGGATTTAGAGCGTGCTTTAGAAGCTATTCGTTCCGGTCAAACGTCCGTCCAAAAAGCAAGCACTGAATTTGGTATACCTACAGgaaCACTATATGGAAGGTGTAAAAGAGAAGGAATCGAGTTGTCAAGATCTAATCCAACACCATGGTCAGAAGATGCTATGAATGAAGCCTTAGTTGCTGTGAGaGTCGGTCATATGTCGATAAATCAGGCAGCTATACACTACAATCTTCCATACAGTTCGCTATACGGTCGATTCAAGCGTGGTAAATATGATACGTCCGCATCGACTGTAACATCCGCCAACACAGCCAACACGTCCAGCAATATGGATATCATAGAACATAGTCCTGAAAATTCGTCACATATGTTTCAGCAATTCCAATACAGTCCTGGGCAACCGACAacgcaacagcaacaacagcatCCACAACATCAACCCCAGCAGCAACAACCGCAGCCGCAAATGCATCTGCAACATCAACAGCCTCAACAGCAGCAACCTCAACATCATCAGCCCCAACCGCAGCAACATCACCTCCAACAGCATGCCCAGCATCCCCAACTGCAACACCAGCCACCACAGCATCATCCCCAGCAACCTACTCATATTCAACAACTCGATGTGGTAACGTCGAGTAGTCAAGTTCACACCCAACCCGGGCAAATCCAGCAAATACAGTATCATCATCACAGTGCCCCGGAGAGAAGTTGA
- Protein Sequence
- MVISGLLRTAEQLKIKGLCETTDQSDESTADGALITVPVSESVQSQQSQQLTSTPNSVGSATAINTNPIRKTRIRKRSKSPDTNASLNNTNQQTFTSTSVVGSSSSNSTTPNFSSVGSVPITTVASFKSDQHNPHQLQQHQQHQHHHSQQQHHQQQHQQHHQQQQQQHLAAGTTIDSGQDSNSSSVKPTKIIKTEDVSNNGGSSIVPTSGTILTQIVVSRDKDNKTMTSLGMGINGGLLGVPMGFLDFAPEPPAPSATPVTEHVDMSCTPSTDTRDLSNPTETLDIDNHIAQHIIQRLDQSPMDQMHHQTSTPDENKISNQIIQNIKTEIVDKHQQHHQQQHHQQQQQHHHHQQHQQQQQQQQQMQGQSQQSHHQDLSGTTVMEIDPSNIKHEPAMIITPEIVTMMTTGNMDLYNSDTSEDSLMIANGSPNDNNEPQYTNLDQQEVKANGPKTWTPEDMNSALEALKNHNMSLTKASVTYGIPSTTLWQRAHRMGIDTPKKEGTTKSWNEEALNNALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVRVGHMSINQAAIHYNLPYSSLYGRFKRGKYDTSASTVTSANTANTSSNMDIIEHSPENSSHMFQQFQYSPGQPTTQQQQQHPQHQPQQQQPQPQMHLQHQQPQQQQPQHHQPQPQQHHLQQHAQHPQLQHQPPQHHPQQPTHIQQLDVVTSSSQVHTQPGQIQQIQYHHHSAPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01127235; iTF_01043543;
- 90% Identity
- -
- 80% Identity
- -