Npan028229.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- -
- Assembly
- GCA_963978885.1
- Location
- OZ022264.1:51735460-51749901[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-11 1.7e-08 36.2 0.0 1 38 493 531 493 536 0.91 2 4 6e-13 4.4e-10 41.3 0.1 2 39 548 585 547 588 0.94 3 4 1.2e-18 8.4e-16 59.6 0.0 1 45 602 647 602 647 0.98 4 4 1.5e-16 1.1e-13 52.9 0.0 1 43 654 697 654 699 0.94
Sequence Information
- Coding Sequence
- ATGCTGAGCTGTGAAGAAAGAGGATGGGCTTTGTGCACTAGGAAGTATCCCAAGGCAGAAAAAAATGTGAAACAAACGGCAAGAAGACCCTCGTGGCAGTGGGCGGATCAGGGGGTGCTGTTGGGTACGGGCCTTCTCCGAACGGCCGAGCAATTAAAGATCAAAGGCCTCTGCGAGACATCAGATCAGCCCGAAGAAGGAGCGTCTGATTCGACTCTAATTACAGTGCCAAAGACAGATACAGTGCAATCACAACCTACCACGCCTAGCGTTTCGAATACTGCCGGTACTTCAACACAAGTAAATAGCAATCCTGTGCGAAAGTCACGAGTTCGTAAGCGATCAAAATCACCAGATCCAAACGTTTTGACTAACACAAACCAGCAGACGTTCACTTCGTCCTCGGTGATTGGTCTAAGCTCTTCCAATTCAACGGTATCCAATCTTCCAAGTGGCGGAACTGTGCCAATAATTACAGTTGCTGGTCTTAAATCCGATCAGCATCACCAACaacatcatcatcaccatcaacagcagcagcaacaacaacaacaacagcaccaTCAACAGCATCACCAGCAACAACATCAGCAGCATCAACACTTATCTCAAGCCTCTGGGACTATAGATAGTGGTCAGGATTCAAGTACCGGCTCTGCGAAACCaacgaaaattattaaaactgaAGACGTATCAAATAATGGTGGAAACAACATTGTCCCAACTAGCGGAACGATTCTAACACAGATTGTAGTAGCACGCGACAAGGATTCGAAGACAATGACTAGCATAGGAATGGGAATTAATGGTGGCCTACTGGGCGTCCCAATGGGATTCCTAGATTTTGCACCAGAACCTCCAGCCCCGTCAGCGACACCGGTCACTGAACATGTGGATATGTCCTGTACACCTAGCGCTGACACAAGAGACTTATCGAATCCCACCGAAACCCTCGATATAGACAATCATATAGCCCAGCATCTAATACAGCGTTTAGATCAATCACCAATGAATCAAATGCAACATCAAAATTCTACAGCTGATGAAAATAAGCTATCTAAtcaaataatacaaaatatcaaaacGGAAATTGTCGAAAAACAACATCAACAGCATCATCAAGTACATCAACAGCAccatcaacaacaacagcagcatcAACAACAACACCATCATCACCAACAGCAACATCAGCAGCAGCAACTTCAAGGACAATCGCAACAACAGACTCATCATCAGGATATGTCTGGGACGACAGTCATGGAAATTGATCCGAGCAATATCAAACATGAACCGGCGATGATCATAACACCTGAAATTGTCACAATGATGACGACAGGAAATATGGATATCTATAATTCGGATACTAGTGAAGAATCTCTCATGATTGCCAACGGTTCGCCCAATGAAAATAATGAGCTGAAATACACAAATCTTGACCAGCAGGATATCAAATTGAATGGACCGAAAACCTGGACTCCCGAAGATATGAATGCTGCTCTGGATGCATTGAAAAATCATCATATGAGTTTAACTAAAGCATCGGTCACATATGGTATTCCTTCGACGACGTTATGGCAACGAGCACATCGAATGGGAATCGATACACCGAAAAAAGAAGGCACTACAAAGTCATGGAATGAAGAAGCACTAAATAATGCCCTGGAAGCGTTACGAACCGGTCAAATATCAGCGAATAAAGCTTCGAAAGCGTATGGTATTCCGTCCTCAACACTGTACAAAATAGCTCGACGTGAAGGAATTCGACTGGCCGCACCGTTCAATGCAGCACCAACAACGTGGACACCGGAAGATTTAGAACGTGCCCTGGAGGCTATTCGATCCGGTCAAACGTCCGTCCAAAAGGCTAGCACAGAATTTGGTATACCGACAGGAACACTTTATGGAAGGTGCAAGCGTGAAGGTATCGAACTATCGCGATCTAATCCAACCCCATGGTCAGAGGATGCTATGAATGAAGCCTTAGTAGCTGTCAGAGTTGGTCATATGTCCATCAATCAGGCAGCTATCCACTACAACCTTCCATATAGTTCACTCTACGGCCGATTTAAACGCGGTAAATTCGATACGTCCTCAGCAACTGCCACTTCAGCCAATAATACAGGCAACACATCTAGCAATATGGATATAATCGAGCATAGTCCAGAAAATTCGTCACATATGTTCCAGCAATTCCAATACAGTCCAGGACCTGCGACTGCGCCGCAACAGCATCAACCACAACAGCAACATACTCAGCAACATCAGCCGCAGCAACCGCAACAGCCTCAGATGCACATTCAACATCAACAGCCTCAACCGCCACAACAACAACCTCAACATCATCAGTCCCAGCAACAGCAGCATCATCTTCAACAGCACGCTCCGCATCAACTTCAACATCAACCACCGCAGCACCATCCGCAACACATTCAACAGCTGGATGTTGTTACATCAAGCAGTCAAGTACATACCCAGCCCGGGCAAATCCAGCAGATCCAATATCACCATCACAGCACGCCCGAAAGAAGTTGA
- Protein Sequence
- MLSCEERGWALCTRKYPKAEKNVKQTARRPSWQWADQGVLLGTGLLRTAEQLKIKGLCETSDQPEEGASDSTLITVPKTDTVQSQPTTPSVSNTAGTSTQVNSNPVRKSRVRKRSKSPDPNVLTNTNQQTFTSSSVIGLSSSNSTVSNLPSGGTVPIITVAGLKSDQHHQQHHHHHQQQQQQQQQQHHQQHHQQQHQQHQHLSQASGTIDSGQDSSTGSAKPTKIIKTEDVSNNGGNNIVPTSGTILTQIVVARDKDSKTMTSIGMGINGGLLGVPMGFLDFAPEPPAPSATPVTEHVDMSCTPSADTRDLSNPTETLDIDNHIAQHLIQRLDQSPMNQMQHQNSTADENKLSNQIIQNIKTEIVEKQHQQHHQVHQQHHQQQQQHQQQHHHHQQQHQQQQLQGQSQQQTHHQDMSGTTVMEIDPSNIKHEPAMIITPEIVTMMTTGNMDIYNSDTSEESLMIANGSPNENNELKYTNLDQQDIKLNGPKTWTPEDMNAALDALKNHHMSLTKASVTYGIPSTTLWQRAHRMGIDTPKKEGTTKSWNEEALNNALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVRVGHMSINQAAIHYNLPYSSLYGRFKRGKFDTSSATATSANNTGNTSSNMDIIEHSPENSSHMFQQFQYSPGPATAPQQHQPQQQHTQQHQPQQPQQPQMHIQHQQPQPPQQQPQHHQSQQQQHHLQQHAPHQLQHQPPQHHPQHIQQLDVVTSSSQVHTQPGQIQQIQYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01375644;
- 90% Identity
- -
- 80% Identity
- -