Onig002726.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- -
- Assembly
- GCA_963942545.1
- Location
- OZ012659.1:25586275-25593546[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.7e-11 2.7e-08 35.0 0.0 1 38 513 551 513 556 0.91 2 4 6.3e-13 2.9e-10 41.2 0.1 2 39 568 605 567 608 0.94 3 4 1.2e-18 5.7e-16 59.5 0.0 1 45 622 667 622 667 0.98 4 4 8.3e-18 3.9e-15 56.9 0.1 1 44 674 718 674 719 0.97
Sequence Information
- Coding Sequence
- ATGTGTGCTCAAGGGAAGAATAAGAAATGCACAGCACGCGAGGGAATTCAAACCGGTCATCTATATATCCTGCGTCGAAAAGAATTCCCGGGGATGAATCAAACCGTCCTCGGTGCGGCAGCAGGCAAGATGGCTGGCAAGCGGACTAGCAAGGAAGAGCGGGACGGTCTTCTTCGCACGGCTGAACAACTGAAAATCAAAGGACTCTGTGAAACAACAGAGCAATCAGAAGATCAATCCTCCGAATCGGCTTTAATAACAGTGCCAGTAACGGAAACAGTGCAATCCCAACAGTCGCAACATTTAAACAATACAGCCAACACAGTCGGTCCGGTGACACCAGTTAATGCAAATCCGATTCGCAAGACCCGCATCCGAAAGCGATCTAAATCGCCCGATACGAACGCATCCTTAAATAATACCAACCAGCAGCAGGTTTTCACAGCAGGATCTGTAGTTGGCTTGGGTGCATCCATCTCAGCCGCTTCGAACTTCGCTGCGGTAGGGTCAGTGCCAATAACAACAGTAGCCGGTCTCAAGCTCGATTCACATCAGCACCAACAACATCCGCATCAACATCAgcatcatcatcaccatcaacagcagcaacaacatcAACATCAGCAAAACCAACAACATCAGCAGCAACACCAGCATCAAAACCAGCAGCAACAACATGTGGCCGCAGGAACAACCATCGATAGTGGTCAGGACACTAGTGTAGGCTCGGTGAAGCCgacaaaaatcatcaaaactgaAGACGTTTCAAATCATGGTGGAAACAACATTGTCCCGACAAGTGGAACAATATTAACACAGATCGTAGTGTCACGAGATAAGGACTCTAAAACAATGACTAGCCTAGGAATGGGAATTAATGGGGGCTTGCTGGGGGTCCCGATGGGATTCCTGGATTTTGCACCTGAACCACCGGCCCCGTCAGCGACGCCTGTCACCGAGCACGTAGATATGTCCTGCACGCCCAGTACTGATACAAGAGACTTATCAAATCCCACCGAAACCCTCGATATAGACAATCACATAGCACAGCATATAATACAACGTTTAGATCAATCACCAATGGATCAAATGCACCATCAGACTTCCGTTGGTtctgatgaaaataaaatatccaatcaaattatacaaaatatcaaaacagaaattgttgaaaaacaaCACCAGCAACATCATCAACAACACCACCATCAGCATCAACAACAACACCACCATCATCACCACCAGCAGCAGCATCAACAACAGATGCAGGGACAATCGCAACAACAGAGTCATCATCAAGACTTGACCGGCACAACGGTCATGGAAATTGATCCGAACAACATTAAACATGAGCCGGCGATGATAATAACGCCGGAAATAGTTACGATGATGACTACGGGAAACATGGATATCTACAATTCCGATACGAGCGAGGACTCGCTCATGATTGCCAATGGATCACCGAACGAGAACAACGAGCCGCAATACACGAACCTCGATCAGCAGGAAGTGAAGGTGAACGGCCCGAAAACGTGGACTCCAGAGGATATGAATTCGGCCCTGGAAGCATTGAAAAATCACAATATGAGTCTGACAAAAGCGTCGGTGACGTATGGCATTCCGTCGACGACACTATGGCAACGGGCGCATCGGATGGGCATCGATACACCGAAAAAAGAAGGCACCACTAAATCGTGGAATGAAGAAGCACTGAACAATGCTCTGGAAGCTTTACGAACTGGTCAGATTTCAGCGAACAAGGCTTCAAAAGCGTATGGTATTCCGTCCTCAACACTGTACAAAATAGCACGACGCGAAGGGATTCGACTGGCGGCTCCGTTCAATGCGGCGCCAACCACGTGGACACCCGAGGATCTAGAACGTGCTTTGGAAGCAATTCGATCCGGCCAAACGTCCGTCCAAAAAGCCAGCACTGAATTTGGTATACCTACAGGAACTCTTTACGGGAGGTGTAAGCGTGAAGGCATCGAACTGTCGCGCTCGAATCCCACACCATGGTCGGAAGACGCTATGAACGAAGCACTGGTAGCTGTGAGAGTGGGTCACATGTCCATAAATCAGGCAGCGATACACTACAACCTTCCATACAGCTCGCTGTACGGTCGATTTAAGCGTGGCAAGTACGAAACGTCTACATCGACGGCTACTTCCGCCAACAACACCGCGAACACGTCTAGTAACATGGACATAATCGAGCATAGTCCCGAGAATTCGTCGCATATGTTCCAGCAGTTCCAGTACAGCCCGGGGCCGCAGCCGACGCAGCAACCACAGCATTCGCAGCAGCATCAACCAGCCccgcagcagcaacaacaacaacaacagcagcagccTCAGATGCATTTGCAGCATCAGCAGGCGCCCCAACAGCCGACGCAGCATCACCATCTGCAACAGCATGGCCAGCATCCGCAGTTGCAGCATCAGCAGGCGCCCCAACAGATCCACCCCCAGCAGCAGCAGCACATCCAACAGCTGGATGTGGTGACGTCGAGCAGCCAGGTGCACTCGCAGCCCGGGCAAATCCAGCAGATACAGTACCATCATCACAGCGCGCCCGAGAGGAGTTGA
- Protein Sequence
- MCAQGKNKKCTAREGIQTGHLYILRRKEFPGMNQTVLGAAAGKMAGKRTSKEERDGLLRTAEQLKIKGLCETTEQSEDQSSESALITVPVTETVQSQQSQHLNNTANTVGPVTPVNANPIRKTRIRKRSKSPDTNASLNNTNQQQVFTAGSVVGLGASISAASNFAAVGSVPITTVAGLKLDSHQHQQHPHQHQHHHHHQQQQQHQHQQNQQHQQQHQHQNQQQQHVAAGTTIDSGQDTSVGSVKPTKIIKTEDVSNHGGNNIVPTSGTILTQIVVSRDKDSKTMTSLGMGINGGLLGVPMGFLDFAPEPPAPSATPVTEHVDMSCTPSTDTRDLSNPTETLDIDNHIAQHIIQRLDQSPMDQMHHQTSVGSDENKISNQIIQNIKTEIVEKQHQQHHQQHHHQHQQQHHHHHHQQQHQQQMQGQSQQQSHHQDLTGTTVMEIDPNNIKHEPAMIITPEIVTMMTTGNMDIYNSDTSEDSLMIANGSPNENNEPQYTNLDQQEVKVNGPKTWTPEDMNSALEALKNHNMSLTKASVTYGIPSTTLWQRAHRMGIDTPKKEGTTKSWNEEALNNALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVRVGHMSINQAAIHYNLPYSSLYGRFKRGKYETSTSTATSANNTANTSSNMDIIEHSPENSSHMFQQFQYSPGPQPTQQPQHSQQHQPAPQQQQQQQQQQPQMHLQHQQAPQQPTQHHHLQQHGQHPQLQHQQAPQQIHPQQQQHIQQLDVVTSSSQVHSQPGQIQQIQYHHHSAPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01375644;
- 90% Identity
- -
- 80% Identity
- -