Scal010646.1
Basic Information
- Insect
- Stomoxys calcitrans
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_001015335.1
- Location
- NW:31119-53561[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-115 8.6e-111 369.6 27.8 1 299 30 329 30 330 0.92 2 2 0.031 4.3e+02 -0.4 3.6 220 244 358 382 333 404 0.47
Sequence Information
- Coding Sequence
- ATGGATAGTTCGAGTGCCGTGGGACGGCGCCGTGTTAATTCTCGTGTAAATGCAGAGGATCAAGCTTTGGATCAAATCGCTAAAGAGGCTGAAGCCAGATTAGCCGCCAGAAGGCAGGCCAGAGCAGAGGCTCGTGAAATACGAATGCGAGAGTTGGaacgacaacaacagcaacaggaGCTGAATGCTGATCGTGCATTCGATATGCATACAACAGCATCGGGTATAGATCCTTTATCACGAACACGACTAGGAATGGGGAGTGCATCACCAGCAATTAGTGGCTTATTAAATTCTTCAAGGGGTGCCAATTCAATGTCTTCAAGACGTAGCAGTGAAGATTCTCTAGAAGAGGAAGGACGGAGTTTAAGGGATATCCGCCATGAGTTAAAGGACGTGGAGGAACGATTTCGTAAGGCCATGATTGCCAATGCCCAACTGGATAATGAGCGTGCTTCACAGACTTATCAAATACAATTGCTTAAAGACAAACTGGAGGATATGGAAGAATCGTATGCCCAGCTGCAGCGtgaattcaaagaaaaatcacGTGATTGTAATGCCCTTAAGCGTTCACTGGACAAGCTGAGTGAAGAATTGAAGCTGGTTCAAGGACAACTTAATGAAAGGGATACCCTAATTGCGGAACAAGGTTtagttattgttgctgttgaaaATGAGGATGGCACAGATGCCAAACGTGCTCTAGTCAGCGTAGAAAATGCACAATTATTAGGATCAGTTCAGGGTTCTTTAGATGTACGACTTAAGAAATTCACCGAAGAAAAACAACTGTTACAGTCAGAAGTCCAGCAATTGCAAGAACAATTGGAGACATACAAAAGTCAAGGCAAAGGTAGAGGACGGGGAAATTCATTAAATGGTCCTTTGGGTTCAGACGATGACGACTATGAAGCTCAACGAGaagcaaataaaataatatcggactataagtaTAAATTGCAAAAAGCTGAACAAGAAATTGCTAGTCTACAGTCAAGTTTAGCCAGATCAGAAACTCAAGTTATAAGATATAAAAGTACGGCCGAAGCAGCTGAGAAGGCAGAAGCAGAACTGAAAATTGAAAGAAGGAAACTGCAAAGAGAGAATCGTGAGGCCATGGAAAAACTTGAAGAGTTGGAGACATCTAATAATCATCTCATTAAACGGCTGGATAAGCTAAAGAATGCAAAGAGTGCTCTGCTCAAGGATCTTTGA
- Protein Sequence
- MDSSSAVGRRRVNSRVNAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQQQQELNADRAFDMHTTASGIDPLSRTRLGMGSASPAISGLLNSSRGANSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQTYQIQLLKDKLEDMEESYAQLQREFKEKSRDCNALKRSLDKLSEELKLVQGQLNERDTLIAEQGLVIVAVENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFTEEKQLLQSEVQQLQEQLETYKSQGKGRGRGNSLNGPLGSDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLIKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00331516;
- 90% Identity
- iTF_00331516;
- 80% Identity
- -