Slun006671.1
Basic Information
- Insect
- Stomorhina lunata
- Gene Symbol
- Rfx2_2
- Assembly
- GCA_933228635.1
- Location
- CAKOFY010000354.1:310284-323821[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.54 4.7e+03 -1.2 1.6 5 40 61 96 58 102 0.79 2 3 0.24 2e+03 -0.1 1.3 3 35 124 156 122 167 0.76 3 3 4.5e-38 3.8e-34 117.6 0.2 3 78 390 465 388 466 0.97
Sequence Information
- Coding Sequence
- ATGCATTCACGATTGGCTTTGGATCAACAGCAGCATTTACATCATCACTTGCAGCATATAAGTCCGACGCCAAATTTAAATCATATTTTTGAAAAGTGTTGCTGTAATGCGCCTCTCTCAATAAGTTGTCATCATCATCAAAATCAACGTCCTCAATACCAGACCCAACCTCATCATCATCATCAGCTTCTGCAAAAAACTTATCAGAATTTAACACCACATCACCACCATCATCATCACCACCATCATCATTATCAGCATCATCACCAAAATCAGCAACAATCGGTAAACCAACAAAACAAACACCTACAACAGCCGTTATCATCTTCGCCAGTACTGACCGTTTTATCATCCACTCAACTGCAACAACAACAACAACAACAGCTACAAAGGGAATCACAAAATCAGAAACAAAACTCTATCGCCCATCATCGCTTGTACCACCATCATCAATATCATCAACAGACTGTCGTTGCTACAGTATCCTCAAGTTGCTCTGCTGTTGCTGCTGCATCATCGTCATCGCACTTGCCACTTTCACCTCCTCCTGGCCCTATAAATCCGACTGCCCCAGTTGCTACAGGTACTGCTGCTACTGCTTCATTTTTAACTCCTGCAATTTTATCACCAATTCCACCTAGTCTATCGGCAACAGCATCAACCATGTATCGACGTCATAACAATTTATCATATTGTGGTGTTTCAAATCAAGATGCAGCACAAAACTATCAAGTTCAGTATGTGGATACCGAGTTGTATCACAGTAACTCAAGTCAATCTCAAATGGCCTACCCATTTTGTCCAATTGGTGATTATCAAACTGGTGGACAGTCTTACTATTCTACGACAGCTACCACAAATTATTCACCAACTATACCATTGAGTACATCAACACATCCAACAACTTTACCATATATAGTTCCGGTGGAAGAAAGCCTGCTGCTAAATACATCCTCGCAATCTCACAGCAGAGACTCCCCACACAGTTTAACGGAAGTTGCATTTATTCAAGAAACTCATAGTACATCCCAAACTCCTACCTCTACAACGACAAATTCTGTAAATATTGGAAATATCAATATACAGGGAGGAAGTAATGTAGCAGTGGTTAATACTTCTCCCGATCACGATCACAACGCTTTAGGAAATACAAACAAAATAGCATCTGCGACTATAAAATGGCTTTCACGGAATTACGAAACTGCAGAAGGTGTAAGTTTGCCACGTTCCACTTTGTATAACCACTATATACAACATTGTAATGAAAGCAAAATAGAACCTGTAAATGCCGCCAGCTTTGGAAAACTCATACGATCCGTATTTTCTGGCCTTAGAACTCGTCGACTTGGTACTCGTGGTAATTCAAAATATCATTATTACGGAATACGCATTAAACCAGATTCGATTCTTAATCAAATAATTGACGAGAAGCCATCATTTCAAAGCCATATCTCAAATACGGTTCACATGGCACAAAATCAAAGTCAAAATTCTATGACTCCCTGCAGTTCAAGTCCAATAGCGGGAACATCTAATCTTCTGCATTCAAATCCAAACTCAAATAATATGTTGCGCAATAGTCGTTATGGCAAAAAGCCGCACTCGTTTAAAACGGAAACACACGAAGCCTGTGGCCAATTTCTAGGCGATGGCTCTGGAGCAATACCAGCATTTCCAGCAATTGAGGTAGACAACACATTTGACAGTGAGCTAACCCAGGAGGACGTCCAAACTTTTCGTTCAATGTACCGTGAACATTGTGAAAATTTTCTAGATGCTGTTTTGAATTTAGAATTTAATGCTATAGAGTTTCTCTGGCGAGATTTTTGGCGAGAAAACAATACAATGGATGAGTGTGCCGAGGAGGAGAAGTATTTAACTAAGACCAAATTATATTTAATGTGTCATTGTTCGGGCATTCAAAAATTTGTGCGCGAGGTTGACTATCAATTCTATCAGAATATAGTAGATGTTATTATACCTGATGTCCTCAGATCTATACCGAATTCCCTTACTCAGTCTATACGAAATTTTGCCAAAAATATGGAAATTTGGTTGTGCGAATCAATGGTTGGTGTTCCTGAGCGAATGGTACAAATTAAATCTTCCGCCGTATCTGCATTTTGTCAAACTCTCCGTCGCTATACATCTCTCAATCATTTAGCTCAAGCTGCCAGATCAGTTCTACAGAATAGTGGACAAATAACTCAAATGTTGAGTGACTTAAATCGAGTAGATTTTCACAACGTACAGGAACAAGCTGCTTGGGTATGTCAATGCGAACCATCGATTGTATATCGTCTGGAGAACGACTTTAAAACAGCACTGCAACAACAAAGTTCCCTGGAACAATGGGCAACCTGGTTACAAGTTGTTGTAGATTCAGCCTTGCAAGATTATAGCGGAAAGCCTGGCTATGCAAAAGCAGCCAGACAATTTTTACTTAAGTGGAGTTTTTACAGTTCAATGATAATTAGAGACTTGACACTTCGATCAGCATCAAGCTTTGGTAGTTTTCATCTTATACGCCTACTCTATGATGAATACATGTTTTATTTGGTCGAACACAAAATAGCTGAAGCTCATCAGAAAACGGCTATAGCAGTTATTTGTGATTTAAAGCATAAAGAAGTTGAATTTGATTTTGGTTATCAACTGGAGTATATCGCCGCTGACAGTGTTGCCAATGATCGTGCACCCAAGCGCATGAAACATGAATGA
- Protein Sequence
- MHSRLALDQQQHLHHHLQHISPTPNLNHIFEKCCCNAPLSISCHHHQNQRPQYQTQPHHHHQLLQKTYQNLTPHHHHHHHHHHHYQHHHQNQQQSVNQQNKHLQQPLSSSPVLTVLSSTQLQQQQQQQLQRESQNQKQNSIAHHRLYHHHQYHQQTVVATVSSSCSAVAAASSSSHLPLSPPPGPINPTAPVATGTAATASFLTPAILSPIPPSLSATASTMYRRHNNLSYCGVSNQDAAQNYQVQYVDTELYHSNSSQSQMAYPFCPIGDYQTGGQSYYSTTATTNYSPTIPLSTSTHPTTLPYIVPVEESLLLNTSSQSHSRDSPHSLTEVAFIQETHSTSQTPTSTTTNSVNIGNINIQGGSNVAVVNTSPDHDHNALGNTNKIASATIKWLSRNYETAEGVSLPRSTLYNHYIQHCNESKIEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPDSILNQIIDEKPSFQSHISNTVHMAQNQSQNSMTPCSSSPIAGTSNLLHSNPNSNNMLRNSRYGKKPHSFKTETHEACGQFLGDGSGAIPAFPAIEVDNTFDSELTQEDVQTFRSMYREHCENFLDAVLNLEFNAIEFLWRDFWRENNTMDECAEEEKYLTKTKLYLMCHCSGIQKFVREVDYQFYQNIVDVIIPDVLRSIPNSLTQSIRNFAKNMEIWLCESMVGVPERMVQIKSSAVSAFCQTLRRYTSLNHLAQAARSVLQNSGQITQMLSDLNRVDFHNVQEQAAWVCQCEPSIVYRLENDFKTALQQQSSLEQWATWLQVVVDSALQDYSGKPGYAKAARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLYDEYMFYLVEHKIAEAHQKTAIAVICDLKHKEVEFDFGYQLEYIAADSVANDRAPKRMKHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00921189; iTF_00921844; iTF_00199602; iTF_00259519; iTF_00045120; iTF_00258605;
- 90% Identity
- -
- 80% Identity
- -