Bbay007106.1
Basic Information
- Insect
- Bellardia bayeri
- Gene Symbol
- Rfx2
- Assembly
- GCA_950370525.1
- Location
- OX493264.1:134747741-134762763[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.6 1.8e+04 -2.7 0.5 4 35 51 82 48 102 0.64 2 3 2.4 2.6e+04 -3.3 0.3 23 32 136 145 124 157 0.59 3 3 6.1e-38 6.6e-34 117.2 0.1 3 78 374 449 372 450 0.97
Sequence Information
- Coding Sequence
- ATGCATTCGCGACTGATTTTGGATCAACAGCAGCATTTACATCACCACTTGCAGCATTTAAATACGTCGACAAACATCAATCATATTTTGGAAAGGTGTTGTTGTAATGCTCGTGCCATAAGTGGTCATCAGAACCAACGGAATCAGCAACATCAACAGCTCCTTCAACAAACCTATCAGGCTTTTACACCACAACACCATCACCATcatcaccaccaccaccatTACCAACATCGCCAGGTGCACCTGCATCAACAGCAATCGGTGAGTCAACAGCAACAACCGCAACAGTTATCTTCACCAGTCCTGTCCGTTTTCTCATCcactcaacaacaacaacatcatcagcaacagcaTCAGCATCAGCCACAAACACAAtacgaaaataaacaaaactctaTAGCCCATCGTTTGTACCATCAATATCACCAGCAGACTGTCGTTACTACCGTATCTTCAAGTTGTTCTGCTGTAGTTGCAGCATCTCCATCATCACACTTGACGCTTTCATCTGTTCCACCTGCTCCCGCTCCTGCTTCTACTCCTGCTGCTTCATTTTCATCTTCTCCAATTTTATCACCAATTCCACCAGGTGTCTCGGCGACGGCATCAACAATGTATCGACGTCATAACAATTTATCATATTGTGGTGtttCCAACCAAGATGCAGGCCAAAACTATCAAGTCCAATACGTGGACACAGAGTTGTATCATAGCAATTCAAGTCAATCTCAAatGGCTTATCCTTTTTGTCCCATTGGAGATTATCAGGCCGGTGGACAATCTTATTATTCCACAACAACAGCTCCCAATTACTCGTCAACTATACCTTTGAATACAGCAACACATCCATCGACGTTGCCATATATAGTGCCAGTGGAAGATGGTCTGCTGTTAAACACATCTTCGCAGTCCCATAGCAGAGATTCTCCACATAGTTTAACGGAAGTTGCATTTATGCAAGAAACCCATAGTACATCCCAAACGCCTACATCTACAACTGCAAACTCCGTAAATATCGGAAGTGTTAATGTACAGGGAGGAAGTAGATCCGGCGGTGGAAATGTCTCTCCGCAACACGACCTCAATACTATAGggaacacaaacaaaatagcCTCAGCGACTattaaatgGCTGTCACGGAATTATGAAACTGCAGAAGGCGTTAGTTTGCCACGCTCAACATTGTATAATCACTACATACAACATTGCAATGAAAGCAAAATCGAACCTGTAAATGCAGCCAGTTTTGGGAAACTCATACGATCCGTATTTGCGGGACTGAGAACTCGACGTCTTGGCACTCGCGGTAATTCAAAATATCATTATTATGGAATACGAATTAAACCAGAGTCGGTGCTTAATCAAATTCCTGATGAAAAGCCAgcatttcaaatacaaattcCAAATACTGCTCACATGACTCAGAACCAAAGTCAAAATCCTATGACCCCCTGCAGTTCAAGTCCAATTGCTGGGACCTCCAGTACGCTACACTCTGGTGGCACTAACAATATGCTGCATAATAGTCGGTATTCCAAAAAAACGCATTCCTTTAAAACGGAAACACATGAAGCTTGTGGCCAAtttattgGCGATGGCGGTGGAGCAATACCATCATTTCCCACAATCGAACTGGACAACACTTTTGATAGCGAGTTAACTCAAGAAGATGTCGAAACATTTCGCTCAATGTATCGTGAGCATTGTGAGAATTTTTTGGATGCTGTCTTAAACCTAGAATTTAATACTATTGAATTTCTTTGGCGAGATTTTTGGCGTGAAAACAGCAGTATGGATGAATGTACCGAAGAGGagaaatatttaactaaagcaaaattatatttaatgtgtCATTGCACAGGGGTTCAGAAGTTCGTGCGTGAGATTGACTACCAATTTTACCAGAATATAGTAGATGTTATAATACCAGACGTCTTAAGGTCTATTCCGAATTCTTTGACGCAAGCCATACgcaattttgctaaaaatatggaaatttgGTTATGTGAATCAATGATCGGTGTTCCTGAACGCATGGTGCAAATAAAATCATCAGCAGTTTCGGCATTCTGTCAAACACTGCGCCGATATACGTCCCTCAACCATCTGGCTCAAGCAGCCAGAGCCGTTCTTCAGAATAGTGGGCAAATAACACAAATGTTGAATGACTTAAATCGCGTAGACTTTCACAACGTCCAGGAACAAGCCGCTTGGGTGTGTCAATGCGAACCGGCAATAGTGCAGCGCCTAGAAAACGACTTTAAATCTGCTTTGCAACAACAAAGTTCTTTGGAACAATGGGCTGCCTGGTTGCAGGTTGTTGTGGAATCAGCTTTACAAGATTATTGCGGAAAGCCTGGCTATGCGAAAGCTGCTCGGCAATTTCTACTTAAATGGAGCTTTTATAGTTCAATGATAATTCGAGACTTGACATTGCGGTCTGCATCGAGTTTTGGCAGTTTTCACTTAATACGATTACTCTATGATGAATATATGTTTTACTTGGTCGAACATAAAATCGCAGAAGCCCATCAGAAAACAGCTATTGCAGTCATTTGCGATCTAAAGcaCAAGGAGGTGGAATTTGATTTTGGCTACCAACTGGAATACATTGCTGCTGATAGTGTTGTAAATGAACGTGGAGCTAAACGAATGAAACATGAATGA
- Protein Sequence
- MHSRLILDQQQHLHHHLQHLNTSTNINHILERCCCNARAISGHQNQRNQQHQQLLQQTYQAFTPQHHHHHHHHHHYQHRQVHLHQQQSVSQQQQPQQLSSPVLSVFSSTQQQQHHQQQHQHQPQTQYENKQNSIAHRLYHQYHQQTVVTTVSSSCSAVVAASPSSHLTLSSVPPAPAPASTPAASFSSSPILSPIPPGVSATASTMYRRHNNLSYCGVSNQDAGQNYQVQYVDTELYHSNSSQSQMAYPFCPIGDYQAGGQSYYSTTTAPNYSSTIPLNTATHPSTLPYIVPVEDGLLLNTSSQSHSRDSPHSLTEVAFMQETHSTSQTPTSTTANSVNIGSVNVQGGSRSGGGNVSPQHDLNTIGNTNKIASATIKWLSRNYETAEGVSLPRSTLYNHYIQHCNESKIEPVNAASFGKLIRSVFAGLRTRRLGTRGNSKYHYYGIRIKPESVLNQIPDEKPAFQIQIPNTAHMTQNQSQNPMTPCSSSPIAGTSSTLHSGGTNNMLHNSRYSKKTHSFKTETHEACGQFIGDGGGAIPSFPTIELDNTFDSELTQEDVETFRSMYREHCENFLDAVLNLEFNTIEFLWRDFWRENSSMDECTEEEKYLTKAKLYLMCHCTGVQKFVREIDYQFYQNIVDVIIPDVLRSIPNSLTQAIRNFAKNMEIWLCESMIGVPERMVQIKSSAVSAFCQTLRRYTSLNHLAQAARAVLQNSGQITQMLNDLNRVDFHNVQEQAAWVCQCEPAIVQRLENDFKSALQQQSSLEQWAAWLQVVVESALQDYCGKPGYAKAARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLYDEYMFYLVEHKIAEAHQKTAIAVICDLKHKEVEFDFGYQLEYIAADSVVNERGAKRMKHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01373804;
- 90% Identity
- iTF_00259519;
- 80% Identity
- -