Sbis071288.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000498.1:361519-362898[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00076 38 7.5 0.1 18 49 219 250 202 252 0.82 2 6 7.7e-05 3.8 10.7 0.0 21 46 283 308 266 313 0.88 3 6 0.27 1.4e+04 -0.7 0.0 26 48 315 337 308 339 0.85 4 6 0.17 8.4e+03 -0.0 0.2 26 51 344 369 324 372 0.83 5 6 0.022 1.1e+03 2.8 0.1 24 43 374 393 364 398 0.89 6 6 0.00029 14 8.8 0.0 21 43 399 421 397 426 0.89
Sequence Information
- Coding Sequence
- ATGTCATTTCCTATTTGGCCAACATTACTCGATAAGAAAAAGGACAATGTTGAAATGAAGACCTCAAGACCAAGTCAGCTCTTCACCAATATGAAAAGAAAAATCCcttcaaaaaacaatttaactacTAAGAAAACCATGGTCTCAACTCCAAGTTCTAATCTTGGCAATGATAATAATccatcaattaattttttaagaaaaactcaAGGTAATAAAAAGTTTAAGCAAAATTCTCAGTATTCAAGAAAATTAtctatcaaaattaaaaactactctGTAACAAATCATGAACATCCAGAAAAGTCCAAACTGTCACTTGGAttgaaacagaaaaaaaagaGTGAAGATGAGCTATATTGTTTGATATGCAATATCAAGTTTAGTTCTATTGAGCTCTTCGTAGATCACCAAGAGAAGAGTGGTCTTATCTGTAGAGTGTGTACAGCTGAGTTTAACAACCATGACGAACTTGAATCTCATTTTTTTAAGCATAGTGTTTCAAAGTGTAAAGCTTGTAAAGAAGAGTTCATTTGCAGAAAAGATCTTTTACTACACAGGCAAAAAATGCACAGATTTGGCATGTTTGAATGTAAAATATGTAGCAAGACATTTACAAGGAACAGTGGCCTTGAGCGTCACCGAATGCTCAACCACAGTGATAGAGAGGATAACTATAAATGTGTTGTATGCGGTAACTACTACAAGTTTTCATTTCAGTTAAAACACCATTTGGAAATGACTCATATCCCATATGAACATATAGAATGTGGTTTATGTCATAACATATATTTTGGGCCAGAAAGGTTAAAAAGTCATATCAAATCTATACATCTTAACTCAGAAGAAATGGCCCCCACCAGTTGTCCGATTTGTGGAAAAATTTTCAGTAGAGAACACCATCTTTCAAAGCATTTAGAGACACATGATGACACTGTTAGTCTGTGTGAAATTTGTGGAATGTCAATAAAAGGTAAAACTGCAATGAAGAACCATATGAATCGTGAACATCCCAGGACTGGAACCTTCGTATGTAAAATTTGTAACGAGCAGTTCAGCATGAAAAAATTGCTTCGATGGCATTATAGAAGGACTCATTATAAGAAATCCATTCCACTGCCAGTTTATTGTGAAATTTGTGGCAAAGTATACAAgagttctgcaatcttgaagaaaCACAAATTAATTCATTCCAGTGAAAGGCCTTTTAAGTGCGAAATTTGTGGTGCTTCATTCAAACAATCAGTTACACTGTCACTACATAGCAGAGTTCACAGTAGTGTAGGGAAATACTGTTGTAATAGATGTGGAATGACTTTCAAGTGGAAGCAGACATTTGATAAACATTTAAGCAAGTGCGAAAACATAGTTGGACACTGA
- Protein Sequence
- MSFPIWPTLLDKKKDNVEMKTSRPSQLFTNMKRKIPSKNNLTTKKTMVSTPSSNLGNDNNPSINFLRKTQGNKKFKQNSQYSRKLSIKIKNYSVTNHEHPEKSKLSLGLKQKKKSEDELYCLICNIKFSSIELFVDHQEKSGLICRVCTAEFNNHDELESHFFKHSVSKCKACKEEFICRKDLLLHRQKMHRFGMFECKICSKTFTRNSGLERHRMLNHSDREDNYKCVVCGNYYKFSFQLKHHLEMTHIPYEHIECGLCHNIYFGPERLKSHIKSIHLNSEEMAPTSCPICGKIFSREHHLSKHLETHDDTVSLCEICGMSIKGKTAMKNHMNREHPRTGTFVCKICNEQFSMKKLLRWHYRRTHYKKSIPLPVYCEICGKVYKSSAILKKHKLIHSSERPFKCEICGASFKQSVTLSLHSRVHSSVGKYCCNRCGMTFKWKQTFDKHLSKCENIVGH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01373420;
- 90% Identity
- iTF_01373420;
- 80% Identity
- iTF_01373420;