Sbis071288.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000498.1:361519-362898[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.1 41 7.8 0.1 2 21 120 139 119 140 0.91 2 12 0.044 18 9.0 1.2 2 23 144 165 143 165 0.93 3 12 4.8 1.9e+03 2.6 3.1 2 23 169 191 168 191 0.95 4 12 3.2e-07 0.00013 25.2 1.4 1 23 196 219 196 219 0.96 5 12 0.0065 2.6 11.6 3.3 1 23 226 249 226 249 0.97 6 12 0.29 1.1e+02 6.4 0.3 2 23 256 278 255 278 0.95 7 12 8.4e-07 0.00034 23.8 2.8 2 23 288 309 287 309 0.97 8 12 0.0039 1.6 12.3 0.2 3 23 316 337 315 337 0.98 9 12 2.1e-05 0.0082 19.5 1.9 1 23 343 366 343 366 0.98 10 12 0.00024 0.095 16.1 0.2 2 23 376 397 375 397 0.96 11 12 7.6e-06 0.003 20.8 0.3 1 23 403 425 403 425 0.98 12 12 0.47 1.9e+02 5.7 3.5 1 20 431 450 431 452 0.89
Sequence Information
- Coding Sequence
- ATGTCATTTCCTATTTGGCCAACATTACTCGATAAGAAAAAGGACAATGTTGAAATGAAGACCTCAAGACCAAGTCAGCTCTTCACCAATATGAAAAGAAAAATCCcttcaaaaaacaatttaactacTAAGAAAACCATGGTCTCAACTCCAAGTTCTAATCTTGGCAATGATAATAATccatcaattaattttttaagaaaaactcaAGGTAATAAAAAGTTTAAGCAAAATTCTCAGTATTCAAGAAAATTAtctatcaaaattaaaaactactctGTAACAAATCATGAACATCCAGAAAAGTCCAAACTGTCACTTGGAttgaaacagaaaaaaaagaGTGAAGATGAGCTATATTGTTTGATATGCAATATCAAGTTTAGTTCTATTGAGCTCTTCGTAGATCACCAAGAGAAGAGTGGTCTTATCTGTAGAGTGTGTACAGCTGAGTTTAACAACCATGACGAACTTGAATCTCATTTTTTTAAGCATAGTGTTTCAAAGTGTAAAGCTTGTAAAGAAGAGTTCATTTGCAGAAAAGATCTTTTACTACACAGGCAAAAAATGCACAGATTTGGCATGTTTGAATGTAAAATATGTAGCAAGACATTTACAAGGAACAGTGGCCTTGAGCGTCACCGAATGCTCAACCACAGTGATAGAGAGGATAACTATAAATGTGTTGTATGCGGTAACTACTACAAGTTTTCATTTCAGTTAAAACACCATTTGGAAATGACTCATATCCCATATGAACATATAGAATGTGGTTTATGTCATAACATATATTTTGGGCCAGAAAGGTTAAAAAGTCATATCAAATCTATACATCTTAACTCAGAAGAAATGGCCCCCACCAGTTGTCCGATTTGTGGAAAAATTTTCAGTAGAGAACACCATCTTTCAAAGCATTTAGAGACACATGATGACACTGTTAGTCTGTGTGAAATTTGTGGAATGTCAATAAAAGGTAAAACTGCAATGAAGAACCATATGAATCGTGAACATCCCAGGACTGGAACCTTCGTATGTAAAATTTGTAACGAGCAGTTCAGCATGAAAAAATTGCTTCGATGGCATTATAGAAGGACTCATTATAAGAAATCCATTCCACTGCCAGTTTATTGTGAAATTTGTGGCAAAGTATACAAgagttctgcaatcttgaagaaaCACAAATTAATTCATTCCAGTGAAAGGCCTTTTAAGTGCGAAATTTGTGGTGCTTCATTCAAACAATCAGTTACACTGTCACTACATAGCAGAGTTCACAGTAGTGTAGGGAAATACTGTTGTAATAGATGTGGAATGACTTTCAAGTGGAAGCAGACATTTGATAAACATTTAAGCAAGTGCGAAAACATAGTTGGACACTGA
- Protein Sequence
- MSFPIWPTLLDKKKDNVEMKTSRPSQLFTNMKRKIPSKNNLTTKKTMVSTPSSNLGNDNNPSINFLRKTQGNKKFKQNSQYSRKLSIKIKNYSVTNHEHPEKSKLSLGLKQKKKSEDELYCLICNIKFSSIELFVDHQEKSGLICRVCTAEFNNHDELESHFFKHSVSKCKACKEEFICRKDLLLHRQKMHRFGMFECKICSKTFTRNSGLERHRMLNHSDREDNYKCVVCGNYYKFSFQLKHHLEMTHIPYEHIECGLCHNIYFGPERLKSHIKSIHLNSEEMAPTSCPICGKIFSREHHLSKHLETHDDTVSLCEICGMSIKGKTAMKNHMNREHPRTGTFVCKICNEQFSMKKLLRWHYRRTHYKKSIPLPVYCEICGKVYKSSAILKKHKLIHSSERPFKCEICGASFKQSVTLSLHSRVHSSVGKYCCNRCGMTFKWKQTFDKHLSKCENIVGH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01373711;
- 90% Identity
- iTF_01373711;
- 80% Identity
- iTF_01373711;