Sbis030672.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000088.1:1964682-1967621[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1 5.1e+04 -2.6 0.0 29 45 104 120 100 123 0.73 2 15 0.16 8.2e+03 -0.0 0.1 21 43 154 176 132 186 0.79 3 15 0.00012 6 10.0 1.1 21 50 211 240 204 252 0.87 4 15 0.00083 42 7.3 0.1 21 48 267 294 259 300 0.84 5 15 0.9 4.5e+04 -2.4 0.1 23 44 297 318 292 321 0.75 6 15 1.8e-06 0.091 15.9 0.2 21 49 323 351 315 356 0.84 7 15 0.00082 41 7.4 0.1 21 48 379 406 371 412 0.84 8 15 8.6e-05 4.3 10.5 0.8 21 50 435 464 425 476 0.87 9 15 0.00095 48 7.2 0.3 21 48 491 518 481 529 0.86 10 15 7.7e-05 3.9 10.6 0.2 21 47 547 573 537 580 0.85 11 15 0.049 2.4e+03 1.7 0.1 21 45 603 627 594 634 0.88 12 15 0.38 1.9e+04 -1.2 0.1 22 43 632 653 626 664 0.75 13 15 0.16 7.9e+03 0.0 0.0 22 44 786 808 779 813 0.78 14 15 0.013 6.6e+02 3.5 0.4 19 44 841 866 833 874 0.86 15 15 0.095 4.8e+03 0.7 0.0 23 49 873 899 868 903 0.86
Sequence Information
- Coding Sequence
- ATGTCTCCTGTGTGTCCGACGTTGAGGCATCATAAGTGTGTTGATTGCCTAAAGTCATTCCACACAAGGGTAGCACTTAAAAAACATGCAATCATCCATGCCAGCTGCAATGACAACAAATACTTATGTGAGAAATGTGGTGTGCTAATATTAAAGAGAGGAGCCAAGTTACATATACTGACACATTCTAACCAGAGACCTTACGTTTGTAACACCTGTGGAAGAGACTTTAAATCAAAAGATGCTCTTAATTTCCATAATTCACACACTCATAAAATGAACGTCAAAACAAAACGTTTTAATTGTGCCGAATGTGGCAAATATTTTAGCCATTTGCGTAACCTGAAACAACACATGAGTGTACATGGAATGGTGACTGATAGTTTGCACTGCTGCAAAATTTGTGGTAAACATTTTagttctacatcaaaacttaaaGAGCATTTAACAATCCATACTGGTGAAAGACCATATCTCTGCAACGTTTGTGGAGGGAACTTTAGAACAAGGAGGCTCTTAAGCAGTCATTCGTTTATTCATTCTAAACTAAAGCCATCACACTGCTGCAAAATATGCGGCAAATATGAAACCAGAAAAGTTAAGTTAGAAGAACATGTTAGAATTCATACAGGTGAAAAGCCttttgtttgtgatatttgtGGACAGTCTTTTAGAACATCTACACACTTAAGGCGGCATTCTGTTATTCATTCTGATGTGAAGCCCCATTGCTGTAAAATCTGTAACAAATGTTACCTGTCTAAAGCTAAATTAGAAGAACATATGAGAATTCATACGGGTGAAAAGCCTTTTGTTTGTGATATCTGTGGACAGTCTTTTAGAACAACTAGACTCTTAAGGGAGCATTCTGTTATTCATTCAGATGTGAAGCCCCATTGTTGTGAAATCTGTAACAAATGTCACATGACTAAAGCTAAATTAAAAGAGCATATGAGAATTCATACTGGTGAAAAGCCTTTTGTTTGTGATATCTGTGGACAGTCTTTTAGAACAACTAGAAATTTAAGGCGGCATTCTGTTATTCATTCTGATGTGAAGCCCCATTGCTGTAAAATCTGTAACAAATGTTGCCTGTCTAAAGCTAAATTAGAAGAACATATGAGAATTCATACGGGTGAAAAGCCTTTTGTTTGTGATATCTGTGGACAGTCTTTTAGAACAACTAGACTCTTAAGGGAGCATTCTGTTATTCATTCAGATGTGAAACCCCATTGTTGTGAAATCTGTAACAAATGTCACATGACTAAAGCTAAATTAGAAGAACATATGAGAATTCATACTGGTGAAAAGCCttttgtttgtgatatttgtGGACAGTCTTTTAGAACATCTACACACTTAAGGCGGCATTCTGTTATTCATTCTGATGTGAAGCCCCATTGCTGTAAAATCTGTAACAAATGTTACCTGTCTAAAGCTAAATTAGAAGAACATATGAGAATTCATACAGGTGAAAAGCCTTTTGTTTGTGATATCTGTGGACAGTCTTTTAGAACAACTAGACTCTTAAGGGAGCATTCTGTTATTCATTCAGATGTGAAACCCCATTGTTGTGAAATCTGTAACAAATGTCACATGACTAAAGCTAAATTAGAAGAACATATGAGAATTCATACTGGTGAAAAGCCTTTTGTTTGTGATATCTGTGGACAGTCTTTTAGAACAACTAGACTCTTAAGGCGGCATTCTTTTATTCATTCAGATGTGAAGCCCCATTGTTGTGAAATCTGTAACAAATGTCACATGACCCAAGCTAAATTAGAAGAACATATGAGGGTTCACACTGGTGAGAGACCTTATAAGTGCAATGTATGTGGGAAAAACTTTACATCTACACGTATACTTAAAAAACATATGCAAACTCACTCTAATAGACAACCTTATTCCTGTAAAGTTTGTTCTAAATCATTTCTAACATCATTATGCCTTAAAATACATTCCAGAATGCATTCAGAAACACATCCATACGTATGTAAACACTGTGGAAAATGGTTTTTCGCCAAGGAAGGGTTTACTTTGCACAGTAAAAAATGtggtttacaaattttaatgGAAATCGACAGTGTTAAAAACTTAATAGCTGGTGAAAATTTAAGCCTCCCCAACATTAAAAGTGAAAAAGATGAAATACTAGTTAAGACTGAAGATTATGCATATAGTATTGTTTGTAGCACTGCTCCTAGCAGCACCTTGTTAGAAACAGACAGTGTCTCTCACCCTGATTCAAACTTTTCTTTGAATGAATATCATAAATCATTTTCTACTTTACAGAATCTCGATGAACCCAAACTGATACACAACAAGTTACCATCACCAGTCAACCCTCTCCGCACCACCAAACCATTTACATGTTCCGTTTGCAAAGTAGCATTTCAAACTATGGACTCTCTTAGCAGTCATATGATACTGCATGATACATttactattcaacctaaatttgGCCAAATAAATTTCAATCATACCACATCTGTAGACTCTCAGGAAAACCATTCTTTAACGGAGCAATCAAAGCAATCTTTAAAATGTCATATATGCCATAAATGCTTTAAAGTACCATCTCAATTGAAAAAACATTACCTAGTTCATTCAGATATGAGGCCATTTGAATGTGAGCTGTGCCAAAAATCATTCAAGGATAACTTCTCACTTAAACGACATATTAAGTCTATCCACACAATTAAAAAGTTCATCGACAGTGCGTTTTTAGAAAAACCAAATGAGAAGAATGCTGGTGACCTAATGACTCTACAAAGTCTGCTTTGTCCGGAAAATAATGAAAAGGAGTATTGGTATGAAGATAAAAAGATTGGGAAAACCAATCTGCAGAATGAATTATCAGAAGTCACAGATTTAAGTCAATTAAagaatgaaaacaaaacatttcatttaGAGTCATTAGTTAGAATGGAACATTGGTAA
- Protein Sequence
- MSPVCPTLRHHKCVDCLKSFHTRVALKKHAIIHASCNDNKYLCEKCGVLILKRGAKLHILTHSNQRPYVCNTCGRDFKSKDALNFHNSHTHKMNVKTKRFNCAECGKYFSHLRNLKQHMSVHGMVTDSLHCCKICGKHFSSTSKLKEHLTIHTGERPYLCNVCGGNFRTRRLLSSHSFIHSKLKPSHCCKICGKYETRKVKLEEHVRIHTGEKPFVCDICGQSFRTSTHLRRHSVIHSDVKPHCCKICNKCYLSKAKLEEHMRIHTGEKPFVCDICGQSFRTTRLLREHSVIHSDVKPHCCEICNKCHMTKAKLKEHMRIHTGEKPFVCDICGQSFRTTRNLRRHSVIHSDVKPHCCKICNKCCLSKAKLEEHMRIHTGEKPFVCDICGQSFRTTRLLREHSVIHSDVKPHCCEICNKCHMTKAKLEEHMRIHTGEKPFVCDICGQSFRTSTHLRRHSVIHSDVKPHCCKICNKCYLSKAKLEEHMRIHTGEKPFVCDICGQSFRTTRLLREHSVIHSDVKPHCCEICNKCHMTKAKLEEHMRIHTGEKPFVCDICGQSFRTTRLLRRHSFIHSDVKPHCCEICNKCHMTQAKLEEHMRVHTGERPYKCNVCGKNFTSTRILKKHMQTHSNRQPYSCKVCSKSFLTSLCLKIHSRMHSETHPYVCKHCGKWFFAKEGFTLHSKKCGLQILMEIDSVKNLIAGENLSLPNIKSEKDEILVKTEDYAYSIVCSTAPSSTLLETDSVSHPDSNFSLNEYHKSFSTLQNLDEPKLIHNKLPSPVNPLRTTKPFTCSVCKVAFQTMDSLSSHMILHDTFTIQPKFGQINFNHTTSVDSQENHSLTEQSKQSLKCHICHKCFKVPSQLKKHYLVHSDMRPFECELCQKSFKDNFSLKRHIKSIHTIKKFIDSAFLEKPNEKNAGDLMTLQSLLCPENNEKEYWYEDKKIGKTNLQNELSEVTDLSQLKNENKTFHLESLVRMEHW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01373362;
- 90% Identity
- iTF_01373362;
- 80% Identity
- iTF_01373362;