Sbis030672.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stictocephala bisonia
Gene Symbol
-
Assembly
GCA_035578905.1
Location
JAQJVL010000088.1:1964682-1967621[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.0021 0.84 13.1 2.5 1 23 11 33 11 33 0.96
2 26 0.0093 3.7 11.1 1.9 1 19 68 86 68 91 0.87
3 26 6.7e-06 0.0027 21.0 2.3 1 23 100 122 100 122 0.97
4 26 0.00063 0.25 14.8 7.4 1 23 130 152 130 152 0.96
5 26 0.02 8 10.1 0.7 1 23 158 180 158 180 0.92
6 26 0.052 21 8.8 3.4 1 23 187 209 187 209 0.96
7 26 2.7e-06 0.0011 22.2 1.4 1 23 215 237 215 237 0.93
8 26 0.012 4.9 10.7 7.0 1 23 243 265 243 265 0.97
9 26 0.00012 0.049 17.0 0.2 1 23 271 293 271 293 0.93
10 26 0.38 1.5e+02 6.0 9.3 1 23 299 321 299 321 0.96
11 26 5.5e-06 0.0022 21.3 0.6 1 23 327 349 327 349 0.93
12 26 0.15 58 7.3 9.4 1 23 355 377 355 377 0.97
13 26 0.00012 0.049 17.0 0.2 1 23 383 405 383 405 0.93
14 26 0.31 1.2e+02 6.3 8.2 1 23 411 433 411 433 0.96
15 26 2.7e-06 0.0011 22.2 1.4 1 23 439 461 439 461 0.93
16 26 0.012 4.9 10.7 7.0 1 23 467 489 467 489 0.97
17 26 0.00012 0.049 17.0 0.2 1 23 495 517 495 517 0.93
18 26 0.31 1.2e+02 6.3 8.2 1 23 523 545 523 545 0.96
19 26 3.1e-05 0.012 18.9 0.9 1 23 551 573 551 573 0.94
20 26 0.23 91 6.7 7.7 1 23 579 601 579 601 0.96
21 26 1e-05 0.0042 20.4 2.3 1 23 607 629 607 629 0.99
22 26 0.038 15 9.2 3.9 1 23 635 657 635 657 0.98
23 26 0.5 2e+02 5.7 1.4 1 20 663 682 663 684 0.83
24 26 0.0017 0.7 13.4 0.3 1 23 789 811 789 811 0.97
25 26 2.1e-05 0.0082 19.5 7.2 2 23 848 869 847 869 0.97
26 26 9.7e-07 0.00039 23.6 1.6 1 23 875 898 875 898 0.97

Sequence Information

Coding Sequence
ATGTCTCCTGTGTGTCCGACGTTGAGGCATCATAAGTGTGTTGATTGCCTAAAGTCATTCCACACAAGGGTAGCACTTAAAAAACATGCAATCATCCATGCCAGCTGCAATGACAACAAATACTTATGTGAGAAATGTGGTGTGCTAATATTAAAGAGAGGAGCCAAGTTACATATACTGACACATTCTAACCAGAGACCTTACGTTTGTAACACCTGTGGAAGAGACTTTAAATCAAAAGATGCTCTTAATTTCCATAATTCACACACTCATAAAATGAACGTCAAAACAAAACGTTTTAATTGTGCCGAATGTGGCAAATATTTTAGCCATTTGCGTAACCTGAAACAACACATGAGTGTACATGGAATGGTGACTGATAGTTTGCACTGCTGCAAAATTTGTGGTAAACATTTTagttctacatcaaaacttaaaGAGCATTTAACAATCCATACTGGTGAAAGACCATATCTCTGCAACGTTTGTGGAGGGAACTTTAGAACAAGGAGGCTCTTAAGCAGTCATTCGTTTATTCATTCTAAACTAAAGCCATCACACTGCTGCAAAATATGCGGCAAATATGAAACCAGAAAAGTTAAGTTAGAAGAACATGTTAGAATTCATACAGGTGAAAAGCCttttgtttgtgatatttgtGGACAGTCTTTTAGAACATCTACACACTTAAGGCGGCATTCTGTTATTCATTCTGATGTGAAGCCCCATTGCTGTAAAATCTGTAACAAATGTTACCTGTCTAAAGCTAAATTAGAAGAACATATGAGAATTCATACGGGTGAAAAGCCTTTTGTTTGTGATATCTGTGGACAGTCTTTTAGAACAACTAGACTCTTAAGGGAGCATTCTGTTATTCATTCAGATGTGAAGCCCCATTGTTGTGAAATCTGTAACAAATGTCACATGACTAAAGCTAAATTAAAAGAGCATATGAGAATTCATACTGGTGAAAAGCCTTTTGTTTGTGATATCTGTGGACAGTCTTTTAGAACAACTAGAAATTTAAGGCGGCATTCTGTTATTCATTCTGATGTGAAGCCCCATTGCTGTAAAATCTGTAACAAATGTTGCCTGTCTAAAGCTAAATTAGAAGAACATATGAGAATTCATACGGGTGAAAAGCCTTTTGTTTGTGATATCTGTGGACAGTCTTTTAGAACAACTAGACTCTTAAGGGAGCATTCTGTTATTCATTCAGATGTGAAACCCCATTGTTGTGAAATCTGTAACAAATGTCACATGACTAAAGCTAAATTAGAAGAACATATGAGAATTCATACTGGTGAAAAGCCttttgtttgtgatatttgtGGACAGTCTTTTAGAACATCTACACACTTAAGGCGGCATTCTGTTATTCATTCTGATGTGAAGCCCCATTGCTGTAAAATCTGTAACAAATGTTACCTGTCTAAAGCTAAATTAGAAGAACATATGAGAATTCATACAGGTGAAAAGCCTTTTGTTTGTGATATCTGTGGACAGTCTTTTAGAACAACTAGACTCTTAAGGGAGCATTCTGTTATTCATTCAGATGTGAAACCCCATTGTTGTGAAATCTGTAACAAATGTCACATGACTAAAGCTAAATTAGAAGAACATATGAGAATTCATACTGGTGAAAAGCCTTTTGTTTGTGATATCTGTGGACAGTCTTTTAGAACAACTAGACTCTTAAGGCGGCATTCTTTTATTCATTCAGATGTGAAGCCCCATTGTTGTGAAATCTGTAACAAATGTCACATGACCCAAGCTAAATTAGAAGAACATATGAGGGTTCACACTGGTGAGAGACCTTATAAGTGCAATGTATGTGGGAAAAACTTTACATCTACACGTATACTTAAAAAACATATGCAAACTCACTCTAATAGACAACCTTATTCCTGTAAAGTTTGTTCTAAATCATTTCTAACATCATTATGCCTTAAAATACATTCCAGAATGCATTCAGAAACACATCCATACGTATGTAAACACTGTGGAAAATGGTTTTTCGCCAAGGAAGGGTTTACTTTGCACAGTAAAAAATGtggtttacaaattttaatgGAAATCGACAGTGTTAAAAACTTAATAGCTGGTGAAAATTTAAGCCTCCCCAACATTAAAAGTGAAAAAGATGAAATACTAGTTAAGACTGAAGATTATGCATATAGTATTGTTTGTAGCACTGCTCCTAGCAGCACCTTGTTAGAAACAGACAGTGTCTCTCACCCTGATTCAAACTTTTCTTTGAATGAATATCATAAATCATTTTCTACTTTACAGAATCTCGATGAACCCAAACTGATACACAACAAGTTACCATCACCAGTCAACCCTCTCCGCACCACCAAACCATTTACATGTTCCGTTTGCAAAGTAGCATTTCAAACTATGGACTCTCTTAGCAGTCATATGATACTGCATGATACATttactattcaacctaaatttgGCCAAATAAATTTCAATCATACCACATCTGTAGACTCTCAGGAAAACCATTCTTTAACGGAGCAATCAAAGCAATCTTTAAAATGTCATATATGCCATAAATGCTTTAAAGTACCATCTCAATTGAAAAAACATTACCTAGTTCATTCAGATATGAGGCCATTTGAATGTGAGCTGTGCCAAAAATCATTCAAGGATAACTTCTCACTTAAACGACATATTAAGTCTATCCACACAATTAAAAAGTTCATCGACAGTGCGTTTTTAGAAAAACCAAATGAGAAGAATGCTGGTGACCTAATGACTCTACAAAGTCTGCTTTGTCCGGAAAATAATGAAAAGGAGTATTGGTATGAAGATAAAAAGATTGGGAAAACCAATCTGCAGAATGAATTATCAGAAGTCACAGATTTAAGTCAATTAAagaatgaaaacaaaacatttcatttaGAGTCATTAGTTAGAATGGAACATTGGTAA
Protein Sequence
MSPVCPTLRHHKCVDCLKSFHTRVALKKHAIIHASCNDNKYLCEKCGVLILKRGAKLHILTHSNQRPYVCNTCGRDFKSKDALNFHNSHTHKMNVKTKRFNCAECGKYFSHLRNLKQHMSVHGMVTDSLHCCKICGKHFSSTSKLKEHLTIHTGERPYLCNVCGGNFRTRRLLSSHSFIHSKLKPSHCCKICGKYETRKVKLEEHVRIHTGEKPFVCDICGQSFRTSTHLRRHSVIHSDVKPHCCKICNKCYLSKAKLEEHMRIHTGEKPFVCDICGQSFRTTRLLREHSVIHSDVKPHCCEICNKCHMTKAKLKEHMRIHTGEKPFVCDICGQSFRTTRNLRRHSVIHSDVKPHCCKICNKCCLSKAKLEEHMRIHTGEKPFVCDICGQSFRTTRLLREHSVIHSDVKPHCCEICNKCHMTKAKLEEHMRIHTGEKPFVCDICGQSFRTSTHLRRHSVIHSDVKPHCCKICNKCYLSKAKLEEHMRIHTGEKPFVCDICGQSFRTTRLLREHSVIHSDVKPHCCEICNKCHMTKAKLEEHMRIHTGEKPFVCDICGQSFRTTRLLRRHSFIHSDVKPHCCEICNKCHMTQAKLEEHMRVHTGERPYKCNVCGKNFTSTRILKKHMQTHSNRQPYSCKVCSKSFLTSLCLKIHSRMHSETHPYVCKHCGKWFFAKEGFTLHSKKCGLQILMEIDSVKNLIAGENLSLPNIKSEKDEILVKTEDYAYSIVCSTAPSSTLLETDSVSHPDSNFSLNEYHKSFSTLQNLDEPKLIHNKLPSPVNPLRTTKPFTCSVCKVAFQTMDSLSSHMILHDTFTIQPKFGQINFNHTTSVDSQENHSLTEQSKQSLKCHICHKCFKVPSQLKKHYLVHSDMRPFECELCQKSFKDNFSLKRHIKSIHTIKKFIDSAFLEKPNEKNAGDLMTLQSLLCPENNEKEYWYEDKKIGKTNLQNELSEVTDLSQLKNENKTFHLESLVRMEHW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01373709;
90% Identity
iTF_01373709;
80% Identity
iTF_01373709;