Sbim003140.2
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020180.1:13586136-13595105[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.31 7.2e+03 -1.5 0.0 22 46 12 36 9 40 0.84 2 14 0.0025 58 5.2 0.0 21 47 129 155 117 161 0.86 3 14 0.025 5.7e+02 2.1 0.1 21 44 157 180 154 188 0.86 4 14 0.18 4.2e+03 -0.7 0.0 21 45 185 209 182 216 0.88 5 14 0.18 4.2e+03 -0.7 0.0 21 45 241 265 237 268 0.88 6 14 0.15 3.4e+03 -0.4 0.1 25 46 307 328 289 335 0.79 7 14 0.21 5e+03 -0.9 0.0 21 45 361 385 359 388 0.87 8 14 0.0015 35 5.9 0.0 21 47 389 415 376 421 0.84 9 14 0.14 3.4e+03 -0.4 0.1 25 45 509 529 491 532 0.78 10 14 0.0083 1.9e+02 3.6 0.1 21 43 533 555 529 560 0.89 11 14 0.0014 34 6.0 0.0 21 48 588 615 580 621 0.85 12 14 0.0058 1.3e+02 4.1 0.1 27 52 652 677 643 679 0.85 13 14 0.25 5.9e+03 -1.2 0.0 11 27 719 736 701 753 0.56 14 14 0.00013 3.1 9.3 0.0 21 51 787 817 784 822 0.87
Sequence Information
- Coding Sequence
- ATGGAAAAGGAAGTCCTCGAGGAACACACTGATGAAAAACCGTTCGAATGTGAAATCTCCAATAAAAAGTTCAAAGAAAATCAATCACGTAAAAGACATTTGAAGATTCACACGGGCGAAAAGTCTTTCGAATGTGAATtctGGAATGATTCTTCAAGTGGAACAAAAGTCTTTACCGAAGAATTTCTTCAACAAAATGGACATGAAAATCCTGAGAAACAGAAACTATTTGAATGTTtacaatgtaataaaaattttgcctACAAAAATGGTCTTAAACAGCATTTAATGCTTCACACAGGTGAAAAACCATTTGAATGTACATATTGTGATAGCAAATTTCCCACCAAGCCAAGACTTAACGTTCACCTAAAAACACACACTGGTGAAAAACCTTTTGAATGTGAATTCTGCCAAAAAAAGTTCACACAAAAGCGAAATTATCAAAGTCATTTGCTGATTCATACTGGCGAAAAACCTTTCGAATGTGAATTCTGTAATAAAAAGTACATTCAAAAGCGACATCTTCAAAGTCATTTGCTAAATCACAAAGGCGAAAAACCTTTCTTTTGTGAAcactgtaataaaaattttacagaaaaGCGATATCTTGACAAGCACCTGAAGACACACACTGGTGAAAAACATTATGAATGTGAAATCTGCAATAAAAAGTTTACAGTAAATCACGTACTTAAAAACCATATGCTTAAACACACGGGCGAAACACCTTTCGAATGTGAATTATGTAGCAAAAAATTTACGGAGAAACGATATCTTAACACCCACCTAAAGACACACACTGGTGAAAGAGATTTTGAATGCgaaatctGGAACGATTCTTCAAGTGGAACAAAAGTCTTTACCGAAGAATTTACTCAACAAAACGAATCGGAAAATCCTAAGAATGAAGAACTGTTTCAATGCCGGCGTTGTAATAAAACTTGTACCCAATTAAGGAGTCTTGAAGAGCATTTGACACTTCCCACAGGTCAACAACCATTTGAATGTACATTTTGTAATAATGAACTTAACAGTCACCCTACAAGAGACACTAGTGGAAAAGCGTTTATTGGCACAAATGAGAAGCCGTATGAATGTGAactatgtaataaaaaatttacaaaaaagcaTCATCTTAAATCACACCTAAAATCACACACTGGTGAAAAACCATTTGAATGTGAAATCTGCAATAAAAAGTTTACCGAGAATCAAGGACTTAAAAGACATTTGCTCGTTCACACGGGCGAAAAGCCTTTCGAATGTGAagtatgtaataaaaaatttgcatataaGTTTCGTTTGAAGAAGCATGTGATTAAGCATAATAAAGTTAAAGTTAGTTTCGAATGTGAATATTGCAAAGAAAAGTTTACAGAAAATCACAGATTTAAAAGACATTTGCTCATTCATACGGGAGAAAAgccttttaaatGGAACGATTCTTCAAGTGGAACAAAAGTCTTTACCGAAGAATTTACTCAACAAAACGAATCGGAAAATCCTAAGAATGAAGAATTGTTTCAATGTTGGCAATGCAATAAAACTTGTACCCAAATAAGAAGTCTTAAAGAGCATTTGACATTTCCCACAAGTGAACAACCATTTGAATGTACATTTTGTAATAGTAAAGTCACGACCAAGAGAAGACTTAGCAGTCACCCTACAACAGACACAGATAAGCCGTATGAATGTGAactatgtaataaaaaatttataaaaaagcaacATCTGGTATCGCACCTAAAATCACACACGGGTGAAAAACCATTTGAATGTGaaatctgcaataaaaatttcACCAATAATCAAGGACTTAAGAGACATTTGCTCATTCATACGGGCGAAAAGCCTTTCGAATGTgaattatgtaataaaaaatttgcacATAAGTATCATTTGAAGGAACATGTAATTAAACATAAAGTTAAAGTTAGAAATAATTTCGAATGTGAACACtgcaaaaaaaagtttacaGAAAATCGAGCACTTAAAAGACATTTGCAGCTTCACAAGGGCAAAAAGCCTTTCGAATGTGAAATATGCAACAAAACATTTCACGAAAAGTACAGATATGAAACGCATTTGTTAATTCACACCGGTGAAAAACCGTTTGAATGTGAATTTTGTAAGAAATCATTTTCTGATAGGGGAACGCTTAAACGGCATTCATTAATTCACCAGAGTGAAAAAGCTTTTGTTTGTGAATATTGCAATAAACAGTTTACACGAAAGTATGTATTAAATCAACATATATTGGCTCATACAAATAATGATAAACCATATGAATGTAAACCTtgtaataaaaagttttctaaaaAGCAATATCTTAACACTCACCTAATGACACACACCGGTGAAAAACCTTTCGAATGTGAAATCTGTAATAATAAGTTTACAGAAAATCGAGCACTTAAAAGGCATTTGCTGATCCACAATGATGAAAAGCCTTTTAAATGTGAACTAtgcaataaaacattttccagAAAGTACATCTATGAAACGCATCTGTTACTTCACAAAAGTAAAACAACCGTTTGA
- Protein Sequence
- MEKEVLEEHTDEKPFECEISNKKFKENQSRKRHLKIHTGEKSFECEFWNDSSSGTKVFTEEFLQQNGHENPEKQKLFECLQCNKNFAYKNGLKQHLMLHTGEKPFECTYCDSKFPTKPRLNVHLKTHTGEKPFECEFCQKKFTQKRNYQSHLLIHTGEKPFECEFCNKKYIQKRHLQSHLLNHKGEKPFFCEHCNKNFTEKRYLDKHLKTHTGEKHYECEICNKKFTVNHVLKNHMLKHTGETPFECELCSKKFTEKRYLNTHLKTHTGERDFECEIWNDSSSGTKVFTEEFTQQNESENPKNEELFQCRRCNKTCTQLRSLEEHLTLPTGQQPFECTFCNNELNSHPTRDTSGKAFIGTNEKPYECELCNKKFTKKHHLKSHLKSHTGEKPFECEICNKKFTENQGLKRHLLVHTGEKPFECEVCNKKFAYKFRLKKHVIKHNKVKVSFECEYCKEKFTENHRFKRHLLIHTGEKPFKWNDSSSGTKVFTEEFTQQNESENPKNEELFQCWQCNKTCTQIRSLKEHLTFPTSEQPFECTFCNSKVTTKRRLSSHPTTDTDKPYECELCNKKFIKKQHLVSHLKSHTGEKPFECEICNKNFTNNQGLKRHLLIHTGEKPFECELCNKKFAHKYHLKEHVIKHKVKVRNNFECEHCKKKFTENRALKRHLQLHKGKKPFECEICNKTFHEKYRYETHLLIHTGEKPFECEFCKKSFSDRGTLKRHSLIHQSEKAFVCEYCNKQFTRKYVLNQHILAHTNNDKPYECKPCNKKFSKKQYLNTHLMTHTGEKPFECEICNNKFTENRALKRHLLIHNDEKPFKCELCNKTFSRKYIYETHLLLHKSKTTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01371598;
- 90% Identity
- iTF_01371598;
- 80% Identity
- iTF_01371598;