Basic Information

Insect: Stenoptilia bipunctidactyla
Gene Symbol: -
Assembly: GCA_944452705.1
Location: CALYCB010000933.1:249246-250895[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00043 19 6.7 0.1 26 48 82 104 69 109 0.89

2 11 0.0096 4.3e+02 2.4 0.1 25 44 111 130 104 136 0.82

3 11 0.0021 95 4.5 0.4 19 47 134 162 128 165 0.84

4 11 0.037 1.7e+03 0.5 0.2 21 47 166 192 160 195 0.84

5 11 0.00046 21 6.6 0.0 20 48 195 223 191 225 0.89

6 11 0.016 7.4e+02 1.7 0.1 26 49 259 282 252 285 0.87

7 11 0.015 6.9e+02 1.7 0.0 17 46 318 347 314 352 0.81

8 11 3.8e-05 1.7 10.1 0.2 25 48 354 377 347 380 0.89

9 11 0.0001 4.5 8.8 0.3 22 49 381 408 378 412 0.88

10 11 0.09 4e+03 -0.7 0.1 23 30 411 418 404 431 0.83

11 11 0.049 2.2e+03 0.2 0.1 26 48 442 464 437 467 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00043	19	6.7	0.1	26	48	82	104	69	109	0.89
2	11	0.0096	4.3e+02	2.4	0.1	25	44	111	130	104	136	0.82
3	11	0.0021	95	4.5	0.4	19	47	134	162	128	165	0.84
4	11	0.037	1.7e+03	0.5	0.2	21	47	166	192	160	195	0.84
5	11	0.00046	21	6.6	0.0	20	48	195	223	191	225	0.89
6	11	0.016	7.4e+02	1.7	0.1	26	49	259	282	252	285	0.87
7	11	0.015	6.9e+02	1.7	0.0	17	46	318	347	314	352	0.81
8	11	3.8e-05	1.7	10.1	0.2	25	48	354	377	347	380	0.89
9	11	0.0001	4.5	8.8	0.3	22	49	381	408	378	412	0.88
10	11	0.09	4e+03	-0.7	0.1	23	30	411	418	404	431	0.83
11	11	0.049	2.2e+03	0.2	0.1	26	48	442	464	437	467	0.84

Sequence Information

Coding Sequence: ATGGATTTGAGAATTGAAGAAGTGCAAATAAAACCTGAAATCATAGATGAAGAAAATTTTGATTCCAAATCAGTGACAGTTAAAATAGAGCCTTTTGAGAATGAGTTCACTGACAACTGTACATCAACTGATTCAAAAACTTGTATTTTACCTAATTTCCAAGTCAAAGTAGAAGCACAGAATCTTGTTATAAATGAAGAGTCAAGCAAAAGTCCAGTCTCCAATACAGCATTTAAAAAAGTAGAATGTCCCCAATGTCATAAGCAGTTCAAAAATAACCAAAATTTAAAAAAGCATATAAAATTTGTGCACTCAACGATAGATGAAGAAATTCACTGTGATATTTGCAATTGTGTTTTCAAAAACTCGGCCAAACTATGGAGCCACAAAAGAAATGCCCATGCCAAAGAACAGGTTTGCAGTTGCCCGCAGTGTGACAAAGTGTTCAACACAAAAAAGAAATTGGCTAACCACATTTACTGTTCGCATCCCGAACCAGACCAGAGTGTAAGTTGTGCATTGTGTAACAAAACATTTAAAAGTAAATATAATTATAAAATACATTTAAGACAGGTACATCCTAGTTCAGAAAAGTCAGTGGAATGTAGTATTTGTTACAAATCCTTTAAAACAAATGGGCTGCTGCAGAAACATATAAACTGGTCACATCCTAAGGACGAGATGATATACAAGTGCTTTGAATGTGACAAAGAATACCCGTCACAACTGTGCCTTCGGAAACACATGGACAATGTGCACACTCTTGAAGAAACCAAATGTGAATTGTGTCAGAAAACCTTCAAAGGACTCAAGTTATTACGGCAGCATTTAAACAGAAAACATGGTCTGAAACAACTGGAGTCTGTACCCTATATAATAGGCACTATACCGTGCAATATGTGCGAGCGTAAATTCACATCAAATACTTCTTTATTTTATCACTTAGAACGAGACCATTCAGGGACTCAGAAAAAAACATACTGTCAGATATGTGAGAAAGATTTCTCCAGTGAACTTAATTTTAAGCGTCATCTATTTACTGTACATTCCTTAGATACAGTTGCGTGCCAGATCTGTCAAAAAGTTTTCAAGTCCACAGATAACCTGGAGAGGCACATCAGAGTGACTCATGCACCGCCGGAAGCTGCAGCCACTTGTGACATTTGTCAGAAAGTCTTCAAATGTAAGATGCATTTACGAATACACGTATCTGCTGTGCATACAGAGAAAGGGCCAGCAAAGTGTGATATATGCGAAAAGGAATTCTCTTCTAGAAAATACATGCTAAAACATAAGAAAACCCATACAGTAGTCCGTCAATACTCATGTGATATTTGTTTTAAAACTTACAAGTCTTTGGGTGACGTCCGTAAACATGCTAAAAGAGTTCACTTAAGCTCGTTAGAAAAATGTCAACTTTGTAAAGAGTTTTTTGATACTCCTGGAGAACTCTGTCAACACATTGTTGAAATACACGGAAACCTGCTACCTGGAACTGTTGTACCGAAGTTTTGTATAACCTGTACTAAGCCTATTGGCACCGGCGCGGAGAGTAACTCATGTACAGAATGTCAGAAAATAACTCCGGAGGATATTACTGTTGAAGTCGATGTCAAAATTGAACCCGAACCAGAGAGTATTCTAAGCTGA
Protein Sequence: MDLRIEEVQIKPEIIDEENFDSKSVTVKIEPFENEFTDNCTSTDSKTCILPNFQVKVEAQNLVINEESSKSPVSNTAFKKVECPQCHKQFKNNQNLKKHIKFVHSTIDEEIHCDICNCVFKNSAKLWSHKRNAHAKEQVCSCPQCDKVFNTKKKLANHIYCSHPEPDQSVSCALCNKTFKSKYNYKIHLRQVHPSSEKSVECSICYKSFKTNGLLQKHINWSHPKDEMIYKCFECDKEYPSQLCLRKHMDNVHTLEETKCELCQKTFKGLKLLRQHLNRKHGLKQLESVPYIIGTIPCNMCERKFTSNTSLFYHLERDHSGTQKKTYCQICEKDFSSELNFKRHLFTVHSLDTVACQICQKVFKSTDNLERHIRVTHAPPEAAATCDICQKVFKCKMHLRIHVSAVHTEKGPAKCDICEKEFSSRKYMLKHKKTHTVVRQYSCDICFKTYKSLGDVRKHAKRVHLSSLEKCQLCKEFFDTPGELCQHIVEIHGNLLPGTVVPKFCITCTKPIGTGAESNSCTECQKITPEDITVEVDVKIEPEPESILS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01368292;
90% Identity: iTF_01368292;
80% Identity: iTF_01368292;