Sbip023751.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- -
- Assembly
- GCA_944452705.1
- Location
- CALYCB010000867.1:85730-87655[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-08 1.1e-05 26.3 0.0 1 38 18 56 18 61 0.91 2 2 6.8 1.1e+03 0.7 0.1 12 22 493 503 492 505 0.90
Sequence Information
- Coding Sequence
- atggttcgcacctataaaaaggccgcgggtacccgcaattataaaaattatACAGAGGAGGTAATGGAAGAAGCAATAGAAAAAATTACAAATAGCGAATTGTCTATAAATGCTGCTTCACTTCTTTAtaaaattccgtttgggacactttataataaatataaaggattacacggaaggacgcctggtgcccaaccagttttcatgcacaatgaagaaatcgcaatattacgtgctgcggctacatgcggtgattggggtttccctcttactttgttagaccttagaatgtttgcaaaggcttatttggataaacaggggaagacagtagaacggtttacaaataacctaccaggtgtcgaatgggcaattagcgttctgaagcgccataaaaacgcctatggccaaagactatcaagtaatattaaaaggtctagagcgactgtgggccgggaatcactaaatagatatttcgacaaccttcactctgaggtagaaaatgtaccaccgtctaatatatttaactatgacgaatctaatatggccgacgatccggggaataaaaggtgtgtatatagaagaggagtaaaatatcctgagaaagtgatgaacttttcgaagagttctactacagttatgatttgtggttctgcagatggcacattattgccgccatatattatttacaaaagtacccatctttatgatacatggaaggaaagaggtattgttggtaaaccgtgctgtgaagagccatgttgcagccggggatgccgttacaatagaacaactagtggatggattgatacaccaacatttagagattggttcatgacttgttttctacctcatgccaaaagattagaagggaaaaaggtgttaatcggtgataatctatcgtctcatattgacaacgatgttataactacatgtgaagcaaataacatcagttttatatgtttggtgcctaattcaacccatttaacccagccgcttgacgttggcttttttcgtccgttaaaaatagcttggagacaaactcttgaagactggaaaaaagccaatttacgaactacatctgtacctaaggagtatttcccacatttgttgaaaaaggcaatcatgaatatggaccgaaaaccACCAAAAAATGATAAAGACGCTTGTACGGAGTTGTCAGCTGTAAAAAGAAATTTGGTGAGCAGTTTTAAGGCTACTGGTATCGCTCCTCTTGATAGAAACAGGGTTTTGAGCAAATTGCCTCCTGAGTTACCTTCTCCTGAAATGGAAACTGTCATCCGAGATTCGTTAACAGAGTTTTTAAGAGAACAAAGATTTGGGAATGAATCACAGCCACCAAGGAAGAGGACAAGACTGCAAATTGAACCCGGTAAAAGTATCTCAACAGTAGATGAACAATCAAATCAAGAAGTTAATGTTGTGCTTGAACACACATTGGATCGAAATTATTGTCCTGTACAAACTGGAACAATGTCTATGCAACAATTGATGCGAAATCCTGTTATCAGCGAGCCATCTACAAGCTATCAAACTGGTCAAGAGGACAACAATCATGATATCACCGATTGCGATTCAGATACTGACAATATAGTGCCAAATCACACTCGAAATACTTTAAGCGATTTCACACAGCTTCCCACAATAGGACAATTTATTTTAGCAAAATTTGGATCACAGAAGGGGAAAAAGACATATCATTATGTATGTTCTATTGAAGATATCATTGGGACTAAACTAGTTGTCCAAGGTTTTAAGTCCCAAAAAAAAACGAAAACTATTTTTAAGGAAGTTCCCAAAGATGTATCAATCATTGAAGTAAGCGATATTATAACTTATCTTCCCAAACCAAAATACATTAACGAATGCTACTCGTTCCCAAATGACGTGATGATTAAAGAATTATAG
- Protein Sequence
- MVRTYKKAAGTRNYKNYTEEVMEEAIEKITNSELSINAASLLYKIPFGTLYNKYKGLHGRTPGAQPVFMHNEEIAILRAAATCGDWGFPLTLLDLRMFAKAYLDKQGKTVERFTNNLPGVEWAISVLKRHKNAYGQRLSSNIKRSRATVGRESLNRYFDNLHSEVENVPPSNIFNYDESNMADDPGNKRCVYRRGVKYPEKVMNFSKSSTTVMICGSADGTLLPPYIIYKSTHLYDTWKERGIVGKPCCEEPCCSRGCRYNRTTSGWIDTPTFRDWFMTCFLPHAKRLEGKKVLIGDNLSSHIDNDVITTCEANNISFICLVPNSTHLTQPLDVGFFRPLKIAWRQTLEDWKKANLRTTSVPKEYFPHLLKKAIMNMDRKPPKNDKDACTELSAVKRNLVSSFKATGIAPLDRNRVLSKLPPELPSPEMETVIRDSLTEFLREQRFGNESQPPRKRTRLQIEPGKSISTVDEQSNQEVNVVLEHTLDRNYCPVQTGTMSMQQLMRNPVISEPSTSYQTGQEDNNHDITDCDSDTDNIVPNHTRNTLSDFTQLPTIGQFILAKFGSQKGKKTYHYVCSIEDIIGTKLVVQGFKSQKKTKTIFKEVPKDVSIIEVSDIITYLPKPKYINECYSFPNDVMIKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00745599;
- 90% Identity
- iTF_00771832;
- 80% Identity
- iTF_01367744;