Basic Information

Insect: Stenodera caucasica
Gene Symbol: RREB1
Assembly: GCA_037414795.1
Location: JAZBGZ010000387.1:18442-26418[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.3e-05 0.0014 18.7 0.4 1 23 138 160 138 160 0.99

2 16 0.00039 0.023 14.8 0.4 1 23 177 199 177 199 0.98

3 16 5.5e-05 0.0033 17.5 6.4 1 23 205 227 205 227 0.98

4 16 8.9 5.3e+02 1.1 0.6 1 9 314 322 314 322 0.89

5 16 0.19 11 6.4 0.3 2 23 344 366 344 366 0.96

6 16 1.3 80 3.7 0.9 1 19 412 430 412 432 0.91

7 16 0.066 3.9 7.8 0.1 1 23 583 605 583 605 0.96

8 16 7.5e-06 0.00044 20.2 0.8 1 23 614 636 614 636 0.99

9 16 0.00076 0.045 13.9 3.1 1 23 642 665 642 665 0.97

10 16 0.00045 0.027 14.6 3.0 1 23 1040 1063 1040 1063 0.97

11 16 0.00051 0.03 14.5 0.5 2 23 1269 1290 1268 1290 0.97

12 16 0.12 6.9 7.1 6.3 1 23 1296 1319 1296 1319 0.97

13 16 0.011 0.68 10.2 1.2 1 20 1364 1384 1364 1385 0.95

14 16 0.36 21 5.5 0.7 1 23 1454 1477 1454 1477 0.92

15 16 0.015 0.91 9.8 0.4 3 23 1535 1555 1533 1555 0.93

16 16 0.0069 0.41 10.9 5.9 1 23 1561 1583 1561 1583 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.3e-05	0.0014	18.7	0.4	1	23	138	160	138	160	0.99
2	16	0.00039	0.023	14.8	0.4	1	23	177	199	177	199	0.98
3	16	5.5e-05	0.0033	17.5	6.4	1	23	205	227	205	227	0.98
4	16	8.9	5.3e+02	1.1	0.6	1	9	314	322	314	322	0.89
5	16	0.19	11	6.4	0.3	2	23	344	366	344	366	0.96
6	16	1.3	80	3.7	0.9	1	19	412	430	412	432	0.91
7	16	0.066	3.9	7.8	0.1	1	23	583	605	583	605	0.96
8	16	7.5e-06	0.00044	20.2	0.8	1	23	614	636	614	636	0.99
9	16	0.00076	0.045	13.9	3.1	1	23	642	665	642	665	0.97
10	16	0.00045	0.027	14.6	3.0	1	23	1040	1063	1040	1063	0.97
11	16	0.00051	0.03	14.5	0.5	2	23	1269	1290	1268	1290	0.97
12	16	0.12	6.9	7.1	6.3	1	23	1296	1319	1296	1319	0.97
13	16	0.011	0.68	10.2	1.2	1	20	1364	1384	1364	1385	0.95
14	16	0.36	21	5.5	0.7	1	23	1454	1477	1454	1477	0.92
15	16	0.015	0.91	9.8	0.4	3	23	1535	1555	1533	1555	0.93
16	16	0.0069	0.41	10.9	5.9	1	23	1561	1583	1561	1583	0.98

Sequence Information

Coding Sequence: ATGCAAGGCGTTGTCTTCATGCCCCTAAATCCGCAACAAGGCTCGCCGCCACCAAATAGTACATTAGTTACCGATATTACTACAATGGAAACATCATCCGAACCAAATGATTTAaccaaagaaaataataataataacaataataataataataataaacaattaaacaaccaaagtaataataatcaaaacgaCTCAGGcatttattcaacaacaaattcaacgattAATAGTGAATCACCGATGGATatatcaacaaatacaacaatcaattcggataattgtgataataatttcgataatcgtAGTGATTGTAgtacaagaacaacaacatcatcaccaccagcaacaacaacatcattacTAGACGAAgatatccaacaacaacaacaacaacaacaacgaaaacaCTACGTATGTccaatttgtgataaaatattaatatcacAACACGAATTCACATTACATATACGTTCacataataatgaaacaataaccgaatttaataatgataataatgataagggCTTCACATGTCGTATTTGTTATAAAGTATTAAGTTCAAGTTCCAGTTTAGATCGACATGTTCTGGTCCATAGCGGCGAAAGGCCCTTCCATTGTAAATATTGCGGTGATACTTTTACCACAAATGGTAATATGCATCGACATATGCGCAcccataacaataataataataataacaataataataataataataatattaataaattagacAATTATGAATCTGATGGTAGTATTGATAGTAATATTAGTACGAACTCGAAAAGTactgaatttaataataataaaattgagtcGAAGAAACGTAAATTGGATCATTCGAAtctagatgatgatgatgatgatgaggatgaggatgatgattatcaaaatctccatgatgacgatgatgaacaacaacaacaacaacagcattaTAAATGTCCAGTTTGTGAGCGTACcgatttcaattcgattttaatattagaaaatcatttagAGGATAATCATCCTGATTATCCAGCTAAATGTGGCCAATGTGATCAGATATTccagaataataaaatattaatagcCCATCGTACAACTATACATGGGTCGAATCAAACCAAACATCACGTTATGGGCTTCAAAGATTTAACATTCGTCGATTTCTCTAGTGAGAAATTTCCACATATTGCACGTTATGAATGCGAAAAGAATTTACATAAAGTTAATAGCGGTTTACGTTTTCAATGTCGTCAATGTTCAAGAGCATTCCCATGTTCAAATTCATTAGAAATACACGAAACAAATTGTAgctcaattgataataataatggtttgGATTTGAcgaaaacaacacaattatcCGAAAATGATATAAGAcggaatgattttttttcgcGATTAAATCTACAAGACAACTCACCGGAGAAATTGACATCATCACCAACtctactacaacaacaatcgcaacaaacaaatgaagcaTCAACGAAATTACGTCAACAATTATTAGCGAAAGCTATAAATATGGAAACAACAAAAGATTTAGCCGATATTCAGTCGATAATATCGATGACGACGAATGGGAGTTTATTGCAACAATTGCAGACAAAGAACGATTCGATTTcgaatcaaaaacaacaagaacaacaacaacaacaacaaaacgattATAGTAATCGTAATGAACAACAGGATGAGGAGTCGCAGGATTTGTTCGCTGTCGAATTTCGTAAAATGAAATTACGCGGCGAATTTCCATGTCGTTTATGTACAGCCGTATTTCCGAATTTGCGTGCTTTAAAAGGCCATAATCGAGCCCATttaaatggtaataataatggtatGTATCGTTGTAATATGTGtccacattcatcaattgataaAGCGGCTCTTATACGTCATATGCGTACGCATAATGGCGACCGTCCATACGAATGTTCATTATGTAATTACGCTTTCACGACAAAAGCCAATTGCGAACGTCATTTGCGCAATCGTCATGCCAAAACGACACGTGAAGAGGTCAAAAAGTCGATAATCTACCATCCTTCAGAAGATCCAACCAATgaagatttgaataaattggcACGTGACGAccgaaaattgaatatttcaactaGCGATAATGATTTATCACCGGATAAAACCGGCAATAAACAACGCAACAATGAACAATTCATaccgaatttattgaaagaaactTTACAGAAAGAATCACCGAAAGTTTTCCATCATAACATCAACGATATTATACgcaatgaaaatttgaaatcttTGAAAGATCACAGTATGGAAAATGGACAAATTTCGCCGTATCTACCACCGTACAATTTCTCTCCGAAAAACTCGAATATTTCCACACCGCATTTAACATCGAAAATTCAAGTGAAAAGCTTGGAAACTCTAAAAGAGCCCAATTACGAAGAGGCCTACTCCGATTCGGATAACAACGATCAAGATGATGAGCCGATGGTGTTGGACTTGAGTAAAAAGAGGGTTGATAGTCACGATAAAACAATACCGGAAGATTTATCGCGGAAATCCACACCACCAactccattattattaccgcCGCCACCGCCTCCAACACAGTTGAATATGAGCGAAATTTTCGcccaacaattattgaaaacaccACCGAAAATCGATCCGGCTGCTCTATACGCCACTCAACTAGCCTTAGCTAGAAATAGTTTTCCGAATTTCGCGAATTGGCCCAGTTTTCCcatcaatcatttattattccaaTCGCTACAAGCACCAATTCTACCGCAAGATAGCCAAGAAATCAAAGAACGTCTACAACGTTATCAATTATGTGGTGGTGGTAATTTGATTACCGATAATTTTACGGAGCGTTTaaagaatttacaaaattttccaaattatcaattgaaggAAACTACAGATTTGAGCCCGAAAATTGACGATTTCAAACCGTTAAATATCGATACGAATTACAAtgagaatttgaatttgagcTTACAAAGTCCGGTAACTACAaccaaacaacaacaacaacaacaagagttGGTACAGTCGCCGAATTCGGTGAAAATGGTGATAAAAAACGGTGTTTTAATGCCGAAACAGAAACAACGTCGTTATCGTACCGAACGTCCCTTCACTTGTGAACATTGTTCGGCTCGATTTACACTACGTTCGAATATGGAACGACATATTAAACAACAACATCCGCAATTTTGGTCGCAACGACAACGCGGCCTCGGTACACCTGGACgtaaaattcaaacaacacCTATTAAGAATTATTGCGATATCAACATACCAAATTACGAATCACAGAAGAACTCCGATATCgatgaaacaacaataaaaaatgagCCGAAcgatgataaattgaaatttgcatTATTATCGCAACATTTACATAGGAGCGATGTTATCAAGAaagaagaagatgatgatTGTGCTCTAATTATCGATgagaatattgagaaaaatatcgAAGATAAAAGTAGAATTTTGGAGGAAAAACTCAAAGAACTCCATGCAAAACAGATCAAgaacgacaacaacaataaaataaaacaagaagAAAATCAAGATTTAGTTCCCATTTCTCGACTACTAGATAATGCgtcacaacaacaatttaaagAGTATTTCAAGCGAGAGGGTGAAGACCACGAAACCGGGGGTGCTAGCGAAGAAGATGAAGAGGGTCTAATCGCTAGTGGTAGTACGAGTGAAGGCAATATTTCCGGTACTGATGAAAATAGATCTGAATCGGAGGCGCCACCGCCGGTTAAGAAGAAATCTGCATATTCGATGGCTCCGAATCGAGTCAGTTGTCCGTTTTGTAGTCGAAAATTCCCGTGGAGTTCATCTTTACGTCGCCATATTTTGACCCATACAGGCCAAAAACCGTTCAAATGTAGTCATTGTCCTTTATTATTTACAACGAAATCGAATTGTGACCGTcatttattgagaaaacaCGGCAATTCAGCCACAACGATAATCAACGATATcactaataacaataataacagtaataatatcaacaataataataataacaataataataataattcgaattatttgatgaGGAACGTTCCTGAACGTCCGTTTAAATGTTCAAATTGTCCTAGTAGTACATTTTCGACCtactcaaatttgaaaaaacacaTCAGTTGTAAGCATTCAACAAATGCTCAAGGGGATGATATTCGGGCGCAAGGCTACGAAGCTGGCAGTTCGGAagatgagaaaatttcaactgaaacatcccaacaacaacaacaacaacaacagaaaatgaACGAATGgaatgataatcaaataattcagaCAAATAAAACTGAAAATGTTGGCGTAGTTCAAAATTCGGATTTACCGTTTAAATGTCATTTATGCGATGGTTCATTTGGCGAGCGTCAAGACGCTCTCGATCATATCAAAGACAAGCATTTCTCCGaatatgatttattgatgACAAAGAATGCTTTAGATAATAATGCTACAATTGTAACAACGACTCAATCAACTGAagattcaacaacaacaacaacgaataaTCATGAAGATGAAGAGAATGATATTCGTGGTAAATTTCCCGATTATTCGAATCGTAAAGTGATTTGTGCGTTTTGTATGCGTCGTTTTTGGTCAGCTGAAGATTTACGACGTCATATGCGAACCCATACTGGTGAACGTCCATTTAGTTGTGATATTTGCCGACGTCGATTCACATTGAAGCATAGCATGCTGCGTCATCGTAAAAAGCATAatgtaaatttcgataatgatattggtaataatagtgatgatgataataatattatcaatttagagAAATATAGTAGGGGTTTAATTGTTGGTAAtagtggtagtggtggtggtggtggtgataaTTTGAAGCATGGGGATAAAACTGAAGAATCTGACGGTAATGAGGGTGGTGATTTAATCAGTAATTTATTAGGTATAAGAGATCgttcatttattgataaagtGCTGACAGCATCCCCCGATGATGTTGCTAAACTATTGGGCGTCAAAAATGGTATtaaagaataa
Protein Sequence: MQGVVFMPLNPQQGSPPPNSTLVTDITTMETSSEPNDLTKENNNNNNNNNNNKQLNNQSNNNQNDSGIYSTTNSTINSESPMDISTNTTINSDNCDNNFDNRSDCSTRTTTSSPPATTTSLLDEDIQQQQQQQQRKHYVCPICDKILISQHEFTLHIRSHNNETITEFNNDNNDKGFTCRICYKVLSSSSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHNNNNNNNNNNNNNNINKLDNYESDGSIDSNISTNSKSTEFNNNKIESKKRKLDHSNLDDDDDDEDEDDDYQNLHDDDDEQQQQQQHYKCPVCERTDFNSILILENHLEDNHPDYPAKCGQCDQIFQNNKILIAHRTTIHGSNQTKHHVMGFKDLTFVDFSSEKFPHIARYECEKNLHKVNSGLRFQCRQCSRAFPCSNSLEIHETNCSSIDNNNGLDLTKTTQLSENDIRRNDFFSRLNLQDNSPEKLTSSPTLLQQQSQQTNEASTKLRQQLLAKAINMETTKDLADIQSIISMTTNGSLLQQLQTKNDSISNQKQQEQQQQQQNDYSNRNEQQDEESQDLFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNNNGMYRCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKSIIYHPSEDPTNEDLNKLARDDRKLNISTSDNDLSPDKTGNKQRNNEQFIPNLLKETLQKESPKVFHHNINDIIRNENLKSLKDHSMENGQISPYLPPYNFSPKNSNISTPHLTSKIQVKSLETLKEPNYEEAYSDSDNNDQDDEPMVLDLSKKRVDSHDKTIPEDLSRKSTPPTPLLLPPPPPPTQLNMSEIFAQQLLKTPPKIDPAALYATQLALARNSFPNFANWPSFPINHLLFQSLQAPILPQDSQEIKERLQRYQLCGGGNLITDNFTERLKNLQNFPNYQLKETTDLSPKIDDFKPLNIDTNYNENLNLSLQSPVTTTKQQQQQQELVQSPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGLGTPGRKIQTTPIKNYCDINIPNYESQKNSDIDETTIKNEPNDDKLKFALLSQHLHRSDVIKKEEDDDCALIIDENIEKNIEDKSRILEEKLKELHAKQIKNDNNNKIKQEENQDLVPISRLLDNASQQQFKEYFKREGEDHETGGASEEDEEGLIASGSTSEGNISGTDENRSESEAPPPVKKKSAYSMAPNRVSCPFCSRKFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTIINDITNNNNNSNNINNNNNNNNNNNSNYLMRNVPERPFKCSNCPSSTFSTYSNLKKHISCKHSTNAQGDDIRAQGYEAGSSEDEKISTETSQQQQQQQQKMNEWNDNQIIQTNKTENVGVVQNSDLPFKCHLCDGSFGERQDALDHIKDKHFSEYDLLMTKNALDNNATIVTTTQSTEDSTTTTTNNHEDEENDIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVNFDNDIGNNSDDDNNIINLEKYSRGLIVGNSGSGGGGGDNLKHGDKTEESDGNEGGDLISNLLGIRDRSFIDKVLTASPDDVAKLLGVKNGIKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00987363; iTF_01566474; iTF_00842111;
90% Identity: -
80% Identity: -