Basic Information

Insect: Iselma pallidipennis
Gene Symbol: RREB1
Assembly: GCA_037464855.1
Location: JAZBHA010000414.1:27774-33048[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.6e-05 0.002 18.2 0.4 1 23 112 134 112 134 0.98

2 16 0.00052 0.023 14.8 0.4 1 23 151 173 151 173 0.98

3 16 7.4e-05 0.0032 17.5 6.4 1 23 179 201 179 201 0.98

4 16 6.3 2.7e+02 2.0 0.1 1 9 277 285 277 301 0.85

5 16 0.0039 0.17 12.1 1.6 2 23 307 329 307 329 0.97

6 16 0.81 35 4.8 0.9 1 20 375 394 375 396 0.91

7 16 0.089 3.8 7.8 0.1 1 23 554 576 554 576 0.96

8 16 1e-05 0.00043 20.2 0.8 1 23 585 607 585 607 0.99

9 16 0.001 0.044 13.9 3.1 1 23 613 636 613 636 0.97

10 16 0.00061 0.026 14.6 3.0 1 23 1018 1041 1018 1041 0.97

11 16 0.00068 0.03 14.5 0.5 2 23 1257 1278 1256 1278 0.97

12 16 0.15 6.7 7.1 6.3 1 23 1284 1307 1284 1307 0.97

13 16 0.015 0.67 10.2 1.2 1 20 1347 1367 1347 1368 0.95

14 16 0.13 5.5 7.3 0.6 1 23 1447 1470 1447 1470 0.95

15 16 0.02 0.89 9.8 0.4 3 23 1526 1546 1524 1546 0.93

16 16 0.0092 0.4 10.9 5.9 1 23 1552 1574 1552 1574 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.6e-05	0.002	18.2	0.4	1	23	112	134	112	134	0.98
2	16	0.00052	0.023	14.8	0.4	1	23	151	173	151	173	0.98
3	16	7.4e-05	0.0032	17.5	6.4	1	23	179	201	179	201	0.98
4	16	6.3	2.7e+02	2.0	0.1	1	9	277	285	277	301	0.85
5	16	0.0039	0.17	12.1	1.6	2	23	307	329	307	329	0.97
6	16	0.81	35	4.8	0.9	1	20	375	394	375	396	0.91
7	16	0.089	3.8	7.8	0.1	1	23	554	576	554	576	0.96
8	16	1e-05	0.00043	20.2	0.8	1	23	585	607	585	607	0.99
9	16	0.001	0.044	13.9	3.1	1	23	613	636	613	636	0.97
10	16	0.00061	0.026	14.6	3.0	1	23	1018	1041	1018	1041	0.97
11	16	0.00068	0.03	14.5	0.5	2	23	1257	1278	1256	1278	0.97
12	16	0.15	6.7	7.1	6.3	1	23	1284	1307	1284	1307	0.97
13	16	0.015	0.67	10.2	1.2	1	20	1347	1367	1347	1368	0.95
14	16	0.13	5.5	7.3	0.6	1	23	1447	1470	1447	1470	0.95
15	16	0.02	0.89	9.8	0.4	3	23	1526	1546	1524	1546	0.93
16	16	0.0092	0.4	10.9	5.9	1	23	1552	1574	1552	1574	0.98

Sequence Information

Coding Sequence: ATGGAAATATCATCTGAACCAAATGATTTGAccaaagaaaacaataataatattaataataacaacaataaacaattaaacaaccaaagtaatagtaataataataataataataatagtaatcaaaACGACTCAGGCATATATTCAACAAcgaattcaacaataaatagtgAATCACCAATGGATATATCagcaaatacaataaattcagataattgtgataataattccGATAATCATAGTGATTGTAGtacaccatcatcaacaacaatattaccaGATGAAGAgatacaacaccaacaccaccaacaacaaaaacaattaaaaaaaaattatatatgtcCAATATGTGATAAAATATTAGTATCACAACATGAATTTACATTACATATACGTTcacataataatgaaacaataagtgaattcaataatgataataatgataaaggcTTTACATGTCGTATATGTTATAAAGTATTAAGTTCAAGTTCTAGTTTAGATCGACATGTTTTAGTACATAGTGGTGAAAGACCatttcattgtaaatattgtggtGATACATTTACCACGAATGGTAATATGCACCGGCATATGCGAACACattccaataataacaataataataataataaattagaaaattatgaatCTGATGGTAGTATTGATAGTAATTTTAGTACAAATTCAAAAAGTACagaattcaataataataaaattgaatcgaaGAAACGCAAATATGAAGCAGATGATATGAGTGATAAGAGActagataatgatgatgatgaggaggAGGATGAGGagaatcatcatcaacaacaacaacaacattacaaaTGTCCAGTATGTGAACGTACtgattttgattcaataatcGTGTTGGAAACGCATTTAGAAGATAATCATCCTGATTATCCAGCAAAATGTAATCAGtgtaatcaaattttccaaaataataaactgtTAACCATACATCGTACAACAATACATGAAAATAGTCCAACAAAACATCATGTTCTTGGTTTTAAAGATTTAACATTTGTCGATTTTTCTAGTGAAAAATTTCCACATATTGCACGTTATGAATGCGAAAAGAATTTACATAAAGTGAATAGTGGTTTACGTTTTCAATGTCGTAAATGTTCAAGAGCTTTTCCATGTTCAAATTCATTAGAAATACACGAAAATGATtgtgtatttaataatgataatgatggtttagatttaacgaaaacaacacaacaattatcAGAAAATGATATAAGACGGAGTGAGTTCTTTTCACGATTAGATCTACAAGATAATTCACCAGAGAAAtttacatcatcatcatcatcgtcgtcatcatcatcatcatcaccatcatcacctgtacatcatcaacaattaaatgaagCTTCAACAAAACTGCGCCAACAATTATTAGCAAAAGCAATAAATATGGAAACAACAAAAGATTTAGCCGatatacaatcaataatttcaatgacaACAAACGGtagtttattacaacaattacaagcCAAAAATGAAGTTGTTTTGactcaaaaacaacaacaacaacaagaaaattccGATTTTATGAATCGTAACGACCAACAAGAAGAAGAGACACAAGATGTATTTGCTGTCGAATTTCGTAAAATGAAATTACGTGGTGAATTTCCATGTCGTCTATGTACGGCAGTTTTTCCGAATTTACGTGCCTTGAAAGGCCACAATCGTGCCCatttaaatggtaataataatggtatgTATCGTTGTAATATGTGTCCACATTCATCGATTGATAAAGCAGCATTAATCCGTCATATGCGTACACATAATGGTGATCGTCCGTACGAATGTTCATTATGCAATTATGCATTTACAACAAAAGCGAATTGTGAACGGCATCTAAGAAATCGTCATGCCAAATCAACACGTGAAGAAGTTAAAAAAGCAATCATCTATCATCCGTCTGAAGATCCAACTAatgaagatttaaataaattagcaCGTAGTGATGAGaggaaattgaatatttccagTGGTGATAGTGATTTGTCACCGGAAAAATTGGTAACTAAACGTAATGAACCATTTATACCGAATTTGTTGAAAGAAACTTTACAGAAAGATACACCGAAAGTTTTCCATCATCATAACATCAACGATATTATACGCAAAGAGAatttgaaatcattaaaagaTCATAGTATGGATAGTGGACAAATATCACCATATCTGCCGCCATATAATTTCTCACCGAAAAGTTCAAATGTATCAACACCGCATTTGACAACATCAAAAATCCAAGTGAAAAGTCTAGAAATACTTAAAGAAACCACCTATGAAACACACTCAGATTCTGACAATAACGAGCAAGATGACGAACCCATGGTGTTAGATTTgagtaaaaagaaaattgaagaagataAAAGCGGTCCAGAAGATTTATCACGgaaatcatcatcaccaccatcaccactaaTACcgcaaccaccaccaccacccccatcATCATtgctactaccaccaccaacacaaTTGAATATGGGTGAAATTTTTGCTcagcaattattaaaaacaccaCCGAAAATTGATCCAGCTACATTGTATGCCACACAATTAGCATTAGCTCGAAATAGTTTTCCAGGTTTTCCAAATTGGCCCGGTTTTCcaatcaatcatttattattccaaTCATTACAATCACCGATATTACCACAAGATACCCAAGATATTAAAGAACGTTTGCAACGTTATCAATtgtgtggtggtggtaatttaattactgataattttACTGAACGTCTAAAAAATCTACCGACTTTTCCGCAATATAAATTAactgaaacaacaaattcgGAAAATTTAAGTCCAAAGAAAATCGATGAATTAAAaccattaaatattgatacgaattataatgaaaatttaaataccaGTCCAATATcaacgaaacaacaacaacaagaactaATTCAATCACCGAATTCAGTTAAAATGGTAATAAAGAATGGTGTTTTAATGCCGAAACAGAAACAACGTCGATATAGAACTGAACGTCCATTTACTTGTGAACATTGTTCAGCTAGATTTACATTACGTTCAAATATGGAACGAcatatcaaacaacaacatccacAATTTTGGTCGCAACGACAACGTGGTCTCGGTACACCGGGACGTAAAGTCCAAACAACACCGGTAAAAAATTTCTGTGATTTAAGCATACCGAGCTATGATACACAGAAAAATTGCGATATTGatgaaccaacaacaacaacaattaaaacagaacaaattgatgataaattaaaatttgctTTATTATCACAACATTTACGctcaaatcaaataaatgccgatattaaaaaagaagatgatgatgattgtgcATTGGTGATTGATGAGAATCTTGAGAAAATAGATAAGAATCTTGATGATAAAAGTCGAATTTTAGAAGAGAAACTTAAAGAACTTCATGCTAAACAGATTCGTAgtgagaataataataaaatcattaaacaagaagaaaatcaagATTTAGTACCAGTTTCTAGATTATTGGATAATGCttctcaacaacaatttaaagaatatTTCAAGCGGGAAGGTGAAGAACAAGAGactggtggtggtagtgaagaagatgaagaaggaCTAATTGCTAGTGGTAGTACTAGTGAAGGCAATATTTCCGGTACTGACGAAAATAGatCTGAGTCGGAGACGGCACCTCCAGTTAAGAAGAAATCGGCTTATTCAATGGCACCAAATCGTGTCAGTTGTCCATTTTGTAGTCGAAAATTCCCGTGGAGTTCATCATTACGTCGCCATATATTAACACATACTGGTCagaaaccatttaaatgtagCCATTgtccattattatttacaacgAAATCAAATTGTGATCGTCACCTATTAAGAAAACATGGTAATtctgcaacaacaataatcaacGATATTacaacgaataataataataataataatagtaacaataataataataatacgaattatTTAATGAGAAATGTTCCTGAACGTCCatttaaatgttcaaattgTCCAAGTAGTACATTTTCGacatattcaaatttaaaaaaacacatcAGTTGTAAACATTCAACGAATGCTCAAGGTGATGATATTCGGGCTCAAGGATATGAGGCTGGCAGTTCTGAAGATGAGAAAATCTCCACTGAATCGtcacgacaacaacaacaacatcaacaaccacaaaaaccAGTAGTTGAATGGGATAATCAAGTAAATCACATCAAAAAtgaacaaccacaacaacaacaacagcaacaacaatctGGACCTGTACAGAATTCTGATCTACCATTTAAATGCCATTTATGTGATGGCTCCTTTGCTGAACGTCAAGAAGCTCTTGATCATATTAAAGAGAAACATTTCAGTGAATATGATTTGTTGATGTCGAAAAATGCATTAGATAATagtgcaacaacaacaacaagcacaacggcagtaacaacaacagatgaTCCTGCACATCATGAAGATGAAGAGAATGATATGCGTGGTAAATTTCCCGATTATTCAAATCGTAAAGTAATTTGTGCATTTTGTATGCGTCGTTTTTGGTCTGCAGAAGATTTACGTAGACATATGCgtacacatactggtgaacgaCCATTTAGTTGCGATATATGTCGTAGACGATTCACATTAAAACATAGCATGTTACGACATCGTAAGAAGCataatgttaattttgataatgagACAGCAAAcaatagtgatgatgatattaataatagttcgattaatttggaaaaatatagTAAGAGTTTTATTACgggaggtggtggtggtagttgtggtggtggtgttggtgttggtaGTAATGGtagtgataacaataatttaaagcATGGAGATAAAACTGAAGAATCTGATGGGAATGATGGTAGTGATTTGATTAGTAATTTATTAGGTATTAGAGATCGTTCGTTTATTGATAAAGTGTTAACAGCATCACCGGACGATGTTGCGAAATTATTGGGCGTCAAAAATGGtattaaagaataa
Protein Sequence: MEISSEPNDLTKENNNNINNNNNKQLNNQSNSNNNNNNNSNQNDSGIYSTTNSTINSESPMDISANTINSDNCDNNSDNHSDCSTPSSTTILPDEEIQHQHHQQQKQLKKNYICPICDKILVSQHEFTLHIRSHNNETISEFNNDNNDKGFTCRICYKVLSSSSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSNNNNNNNNKLENYESDGSIDSNFSTNSKSTEFNNNKIESKKRKYEADDMSDKRLDNDDDEEEDEENHHQQQQQHYKCPVCERTDFDSIIVLETHLEDNHPDYPAKCNQCNQIFQNNKLLTIHRTTIHENSPTKHHVLGFKDLTFVDFSSEKFPHIARYECEKNLHKVNSGLRFQCRKCSRAFPCSNSLEIHENDCVFNNDNDGLDLTKTTQQLSENDIRRSEFFSRLDLQDNSPEKFTSSSSSSSSSSSSPSSPVHHQQLNEASTKLRQQLLAKAINMETTKDLADIQSIISMTTNGSLLQQLQAKNEVVLTQKQQQQQENSDFMNRNDQQEEETQDVFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNNNGMYRCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKSTREEVKKAIIYHPSEDPTNEDLNKLARSDERKLNISSGDSDLSPEKLVTKRNEPFIPNLLKETLQKDTPKVFHHHNINDIIRKENLKSLKDHSMDSGQISPYLPPYNFSPKSSNVSTPHLTTSKIQVKSLEILKETTYETHSDSDNNEQDDEPMVLDLSKKKIEEDKSGPEDLSRKSSSPPSPLIPQPPPPPPSSLLLPPPTQLNMGEIFAQQLLKTPPKIDPATLYATQLALARNSFPGFPNWPGFPINHLLFQSLQSPILPQDTQDIKERLQRYQLCGGGNLITDNFTERLKNLPTFPQYKLTETTNSENLSPKKIDELKPLNIDTNYNENLNTSPISTKQQQQELIQSPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGLGTPGRKVQTTPVKNFCDLSIPSYDTQKNCDIDEPTTTTIKTEQIDDKLKFALLSQHLRSNQINADIKKEDDDDCALVIDENLEKIDKNLDDKSRILEEKLKELHAKQIRSENNNKIIKQEENQDLVPVSRLLDNASQQQFKEYFKREGEEQETGGGSEEDEEGLIASGSTSEGNISGTDENRSESETAPPVKKKSAYSMAPNRVSCPFCSRKFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTIINDITTNNNNNNNSNNNNNNTNYLMRNVPERPFKCSNCPSSTFSTYSNLKKHISCKHSTNAQGDDIRAQGYEAGSSEDEKISTESSRQQQQHQQPQKPVVEWDNQVNHIKNEQPQQQQQQQQSGPVQNSDLPFKCHLCDGSFAERQEALDHIKEKHFSEYDLLMSKNALDNSATTTTSTTAVTTTDDPAHHEDEENDMRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVNFDNETANNSDDDINNSSINLEKYSKSFITGGGGGSCGGGVGVGSNGSDNNNLKHGDKTEESDGNDGSDLISNLLGIRDRSFIDKVLTASPDDVAKLLGVKNGIKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01366559;
90% Identity: -
80% Identity: -