Scau012120.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- egg
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010005500.1:545-1477[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1 6.8e+03 -3.5 0.0 29 38 167 176 157 177 0.77 2 2 1.3e-08 1.2e-05 24.5 0.0 4 72 209 272 206 276 0.86
Sequence Information
- Coding Sequence
- atggtgaaattatcaaaaggtCAATCGATACGTGTTGAATATGATGGTAAATGGATAATGTGTACAGTTATGAATGTTGATTGTTCATTagcattgatttatttcgattcattAAATCGTAGCGAATGGATATATTGTGGTTCGCCACTTTTAAGTCCAATgtttaaagaaaaacaaaacgcTTATAAAAGACATGTTGGTGGACGCAcatcttcaattaataaaattaatgcatCAGATGAATCTATaacaattatacaatatacgaaaaatagtgattttgaGAGGCCTTTTGATGaacaaaaagaacaacaacaacgggctgttgcaagaaaatcaacatcacGTCCTGAACAATtatcaccaataataataccaAATCGACCAATACCAACAGTACCATTTCTaccatcgaataatttgaatagtttcaataatacaaataataataataatagtaataattataataatcataataataatactattaGTGAATCTACAAGTAAAATAATGTATTTCACACCACGTGATCAAGTAATAATGAATCGTTTATATCAGCCACATCAATGTTCACCAGCTTGTGGAGATTATGTACGTCATCATCCAAATAAATTACGTGGCCATAATCCATTGTTGAAACCACTATTAAGTGGTTGGGCACGTATAACACTCAAAATACGTGGACgtaaagaaattttatataaatcacaTTGTGGCCGTATGTTACGTAATATGtttggaatttataaatatttatgtttaacaaaaaatggaatgacagttgatttatttgattttagtaTTAATGTACGTTGTTTAGCTGAATTCACAGTTGAATGTGAACCAATTAAAAAAGATTTATCGAATGGTTTAGAGCAAGTAACAGTACCTGTTATAAatggtataaataatgataaattagatTTCTGA
- Protein Sequence
- MVKLSKGQSIRVEYDGKWIMCTVMNVDCSLALIYFDSLNRSEWIYCGSPLLSPMFKEKQNAYKRHVGGRTSSINKINASDESITIIQYTKNSDFERPFDEQKEQQQRAVARKSTSRPEQLSPIIIPNRPIPTVPFLPSNNLNSFNNTNNNNNSNNYNNHNNNTISESTSKIMYFTPRDQVIMNRLYQPHQCSPACGDYVRHHPNKLRGHNPLLKPLLSGWARITLKIRGRKEILYKSHCGRMLRNMFGIYKYLCLTKNGMTVDLFDFSINVRCLAEFTVECEPIKKDLSNGLEQVTVPVINGINNDKLDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01366338;
- 90% Identity
- -
- 80% Identity
- -