Scau012226.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- egg
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010006131.1:280-1245[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.8 5.6e+03 -3.3 0.0 45 58 5 18 3 36 0.76 2 3 5.5 5.3e+03 -3.2 0.0 30 38 164 172 154 174 0.79 3 3 6.5e-11 6.2e-08 31.8 0.0 4 71 205 267 202 272 0.82
Sequence Information
- Coding Sequence
- ATGCATATAACAAGTCgacaattcataaaaaaatatctattagaaacaaaacaagTTCGTCAATCGATACGTGTTGAATATGATGGTAAATGGATAATGTGTACAGTTATGAATATACATTGTGGTTCGCCACGTTTAAGTCCAATGTTTAAAGAAGAACAAAACGCTTATAAAAGACATGTTGGTAGACGCAcatctttaattaataaaattaatgcacCAGATGAATCTATaacaattatacaatatacgaaaaatagtgattttgaGAGGCCTTTTAACGaacaaaaagaacaacaacaacaacgggctgttgcaagaaaatcaacatcacctcctgaacaattattaccaataataataccaAATCGACCAATACCAACAGTACCATTGCTaccatcgaataatttgaatagtttcaataatacaaataataataatactagtaataataataataattataataataatactattaGTGAACctacaatgaaaataatgtaTTTCACACCACGTGATCAAGTAATAATGAATCGTTTATATCAGCCACATCAATGCTCACCAGCTTGCAAAGATTATGTACGtcatcattcaaataaattacgtaGCCATAATCCACTATCGAAACCACTATTAAGTGGCTGGGCACGTATAACACTCAAAATACGTGGACgtaaagaaattttatataaatcaccTTGTAGCCGTATATTACGTGAtctgtttgaaatttataaatatttacgttcaacaaaaaatgaaatgacagttgatttatttgattttagtaTTAATGTACGTTGTTTAGCTGAATTCACAGTTGAATGTGAACCAATTATAaaagatttatcaaatggTTTAGAGCAAGTAACAGTACCTGTTATAAatggtataaataatgataaatag
- Protein Sequence
- MHITSRQFIKKYLLETKQVRQSIRVEYDGKWIMCTVMNIHCGSPRLSPMFKEEQNAYKRHVGRRTSLINKINAPDESITIIQYTKNSDFERPFNEQKEQQQQRAVARKSTSPPEQLLPIIIPNRPIPTVPLLPSNNLNSFNNTNNNNTSNNNNNYNNNTISEPTMKIMYFTPRDQVIMNRLYQPHQCSPACKDYVRHHSNKLRSHNPLSKPLLSGWARITLKIRGRKEILYKSPCSRILRDLFEIYKYLRSTKNEMTVDLFDFSINVRCLAEFTVECEPIIKDLSNGLEQVTVPVINGINNDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01366341;
- 90% Identity
- -
- 80% Identity
- -