Scau000689.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- bab2
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010000023.1:137580-139453[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.2 8.9e+03 -3.8 0.0 29 35 171 177 171 180 0.82 2 3 2.2e-15 3.2e-12 45.6 0.1 3 45 358 400 356 400 0.92 3 3 0.23 3.4e+02 0.8 0.3 6 18 481 492 479 495 0.79
Sequence Information
- Coding Sequence
- ATGTGCGCGGCTCAACAATATTGTCTACGATGGAACAATCATCGTTCGAATTTATTGACTGTTTTCGATGAACTCCTTCAAAATGAGGCATTCACTGATGTAACATTAGCATGTGAAAGTGGTGGGCCAATTAAATGCCATCGTATGGTTTTGGCGGCATGTTCGccatattttcaaaatctaTTTACCGATTTACCATGTAAACACCCTGTTGTTGTATTAAAAGATGTTAAATATGGTGAAATTAAAGCAATACTTGAATATATGTATCGTGGTGAAGTGAATGTTGCCCAAGATCAATTAGCTGCTTTATTAAAAGTAGCTGAAGCACTTAAAGTTAAAGGTTTAGTTGAGGAGAACCGTTCAACAGGGACAAGTTTTTCAAGTCGTGAAGATGAACCAATGGATCATTCGCCAACAGGCGGCATATCAACATCACATCAAAATGTAcatagtagtagtagtaatcAATCACCACCACATTCATCAACAAATCTACATTATAAAAATCCTTATAGTACGATTTATTCAGGCAAATCTAGTAGTAATAGAGAAACAAGAATGAATTTACCATTATGGGCAATGCCTGGCTTACCACCAATGCCACCTAGTTCGGTTCCTAATCAAAATCATCCTAATACAGCGGCAACAGCTGCCGCTATGTTAAGTAGTTGTTATGAAGCAGCTAGTGATATGTCGCCATTAAGAaggaaaaaattatcaagtcTTTTGATGAATCGAGATACACCTATCTTAAGAACGGTTCTAGGCCAAGGTCAAGCAGATTCCTCGCAACCTGTTAGTTTGGTCTGTCATCCGGATAGTCAAGAACAACAATCAAATGGATCTGAACAAGAGCGCATTGAAAAAcATATAAAAAACGAACCCTCAGAAGATGCTCAATCACCTTATACTGATTTTACTGTATTaaatgatgaagaagaaaaattgaagcttgctattccatcatcatcaccacaaTCTTATACGAATGAAATGCGCAGTTCTGGTATAGCAACTTATGTACCAACACAAAAGCCCGAATGGAAACGTTACAAACAATATACAAGAAATGATATTATGTCAGCTATTGAAGCTGTAAGAAATGGAATGTCAGCATTACAAGCTGCACGAAAATATGGTGTACCATCTCGTACCCTTTACGATAAAGTTAAAAAATTAGGAATAACAACTAGTAGACCATTTAAAAGAGGTTCAAATGGTAGTCCAGCATGTTTTCCATATAGTATAAGTGGAACCGGTTCACCTTATAGTGGACATTTATCAGAAAATGATGATCCAccatctaataataataataataataataataacaataataataataataatacatctATATTGGATGCAACATTTTTACAGCATGCCTTCGATAGTCGAAGCGGTGAAGATCGTGAAACATTAGCAGCAATGGCTGTAGCTGCTGCTGCACATGCTGTAGCTTCCGGCCATTCAATAAGTCCACCAGCAAGTCATACAGCAACTAGCCCAAGTCCAAGTCCGACATTAATGAAATATATGCGACAAAATAGTATGACACCATCACCAGCACCTGGTAGTGATAATCAACATAGCGAAACAAATGGCAGTTCAGAAAGGGAAcgtgatgatgaagatgatcaAGTTGAAGATTTATCAGTTAGTGGTAGAAAACAAGAATCACGTGTTATTATGCCACCGATGAATCAAGTATCAACAATTATGAAAAaagaagaattattaaaagataTGATCAAAGAGGAAGCTAGAAGGGAGGTAAGCGTTGATGAAacggaataa
- Protein Sequence
- MCAAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACESGGPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYGEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSTGTSFSSREDEPMDHSPTGGISTSHQNVHSSSSNQSPPHSSTNLHYKNPYSTIYSGKSSSNRETRMNLPLWAMPGLPPMPPSSVPNQNHPNTAATAAAMLSSCYEAASDMSPLRRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCHPDSQEQQSNGSEQERIEKHIKNEPSEDAQSPYTDFTVLNDEEEKLKLAIPSSSPQSYTNEMRSSGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSPACFPYSISGTGSPYSGHLSENDDPPSNNNNNNNNNNNNNNNTSILDATFLQHAFDSRSGEDRETLAAMAVAAAAHAVASGHSISPPASHTATSPSPSPTLMKYMRQNSMTPSPAPGSDNQHSETNGSSERERDDEDDQVEDLSVSGRKQESRVIMPPMNQVSTIMKKEELLKDMIKEEARREVSVDETE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01277622;
- 90% Identity
- iTF_01566165;
- 80% Identity
- iTF_01366431;