Scau003912.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenodera caucasica
Gene Symbol
Arid2
Assembly
GCA_037414795.1
Location
JAZBGZ010000333.1:25692-36740[+]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.6e-14 1.3e-10 41.4 0.0 2 56 609 664 608 688 0.93

Sequence Information

Coding Sequence
ATGGCCACAATACTCGGCAAGGATCCGGCCACGTACCCCAAGGAACGCGACGGCTTCCTTCGGGACTTGCAGCATTTCCACGAGACGCGCGGGACGCCGTTTAGAAGACCGCCTATTATCGGTGGTAAAGaagttgatttatatttacttTATAATTTGGTGATCAGTCAAGGTGGTTGGATCAAGgtGAATTCGAAAAATGGTTGGTCTGATGTTCTAGAGCAGTTGAGTTTGCCGAAAGAATTGGTCAATGGTAGTGTTGCTCTCAAGCAAATCTATTTGAGacaTCTAGACCGTTGGGAGAAGGTTCATTTTCTTGGCGAAGAAGCTGACAGAgATGTCAATCGAGAATACAATCATCTATCAGCCGATTTATATAAATCTTCAGATTATGATAAACTAGCCTTATCACTTTTATCACCATTACCTAATGAACAAGATTTTGCTATAAATGTTTGTAcattattatcgaatgatGGTAAACATACATTGAAGCTTGAAAAACATCCACGATTAATCGATTATCTTCTTGGTCATGCTGGTGTTTTTTGTCATAgCTCTCTTCGGAAGTTGTTTATACATTGTTATCGCAACATTCGAAAACATTCAATACATAGTTTTTGGAATGATGTACTCGAATCATCTGAATTTCTAGATCTCACAAATGAAGATAAATTTCTTgttacaaataatattaaaaagaaaGATGGTGATGGTGAcaatgaaaaaatgaaaagtgttatggaaattgatgatgatgtttgtGACATTTATAGTGAATTAGCTAAGGACAgtgatttaaaaaattttaaagatTGTTTAcgttttaaattgaatttagagCCCAGTGATAaagaattgttttgtttagaACGTCAACTTGGTACACAAGATTATATTGGACAACGTGTTttacaaataacaacaatattaagGAATCTTAGTTTTATAGAAGAGAATGTACCAGTATTATTACAAAACAGAACATTTCTtaggtttttattattgtgtgcTTCCTCACGATGGGGCTATTTAAAAAATCTTGGTATGGACATGTTAGGTAATGTGGCTggtgaatttttaattaaagaatATCCAAATGATCGATTAGCTgtcgttttattgaaaattataacaaacgGCTTGAAAAGTGAAGATAGAGCTGCATGTATTACGTCACTTGAAGTATTAAATAAACTTAGTCAAAATGAATCAAATGAAGAGAtactattgaaatttcttgaaGTGGAAGTGTTTGAAAAAGTGTGTTCGTTTTTGACTATTCATGATGTtatgttattaatttatacatTAGAATGTTTATATTCATTATCGTCACTAGGTGAACGGtcttgtaatttaattataagcAATCATGGTGTAGTGGATACTTTAGTGTCACTTGTTACTGTTGAAGGGAAAAGTTACGGTCCTAAAGCTTGTATCGGTATGAAATTAGTTGAAACTGTACCAGGTGGAATAAgtacaacgacaacaacacaATCTGTTTCGGTTacaacatcaataacaacatcaacaacaaccacacCAACAGCAAGTTTCAGTCTTATAAATACACCATCATCTATTGCAATATGCTCGAATACATCTATATCTTCAGTTTCATCAATAACGAAAAtctcatcaacaacaacaactccTGTACGAACAGTACAAGTAACACCTCAacgtttattgaatatttcgccatcaccaacaacatcatcagTAACCGGTATTACGACAACTCAGACACAATCGATGACACCTCAACAAttgattcaacaacaacatgccCATCAACAAGCTATTCACGAAAATGAACAGTTCGCTTTAGCTTGGTTACGTGCCAATTATGAACCATGCACCAATAGTAAAGTTGATCATCAAGAACTTTATAAACAGTATTTGAATTCGTGTTCAAAAATTGGTAGACGTGGTGTTATTTCACCATTACATTTTCCTAGATGTGTGCgGTCAGTATTTGGTGGTACAGTAGGTCCAAATCCAATGAAGTCCACTAATTCGAATGAACCACAGTATTATGAAGGCATTAAGGTGCGAGCTCAACCACTCATAATTAATATCCAACCAAATTCCAATCCTAATGTCACACAGCCCAGTTTAAAAGGACCAAATAATCGtcgaaaatcaacaacaatatcaacattatcaacaccaacaacaacaataacaacatcatCCACATCCTTATCAGTTGTTGCTGATAATACAATCAATGACCAATCACAATTGTCTCCTGCCTCACCTATCCTGAAGGCGCAGCTAAGTGCTCCTCCAAAACAGAGGGACACCACTGCACCTGCCACTAGTAAAGGCGATATCAAAAGTCaggTTATGGCTCATCCGCATCTCAGTCAAGCTTTATTAggcaataataatacaacaaatgcTAATACAAGTAAAGAGAATCAATCAGGTCAAAGCAATACGTCGCTGATTAAAAGTTTATTGGCTACAAAGGTAAACGATTGCATGACAACAGTGAGCATGAGGACTGCAACAGACTGCCAAAATGTAGCTCAGgTTGCAgcacgacaacaacaacaaagactTTTAGCACAACAAGTAACAACACCATCTCATTCAATTGATACTAAtaaaaatgtaacaaaattgGATGCCTCAAAAACATGTCGAATAAATGGAGCTAGACAATTGTTCGCTGATAATGACgGTAAAAGAGAACCACCTCAACCACCACCTCCCCCTTTAGCACCATTAagttcaacatcatcatcatcatcatcattatcatcgtcaaCAGTAACACCAGTTGTTGCAGCAAAAGTCAAAACAAATCGTGTTGATAATGAAGATAGTGATTCAACCGGTAATAATTCTTTAGCATCTAGTTCAGGAATGGGTACAATTGGTATAGGTGGTATTTCATCAACTGAAGATGGTGATAATTCATTAACTAGTTTTGAAGGTTTATTGAATGGTGTACCGAATATTGACAATCCATTAAATGAAGATAGTAATTCCAAAGATTCAGCTAAAGTTGTTGCTAATAatgaaataacgaaaaataaacCATTGAGATTGGCtgatttattagagaaaaaaattgaaaaaccaCCACCTTTATTGAATGGTAGTTTAGGCAAAGAATTACGTTTAGGTGAAAAAACTCTTGATCTAGTTGAGAATCATATTGAGAAAGCTCTTAGTCGCGACAATGAAAATTCACATGATCATCATTATATTGACAAGAGAACTGATAGttcgaacaataataataataataataataatgagaataaacCGAATTTAAAACGATCAGCTTCtaatgatattgttgaattggaaCCAAAAAAGCCAATGTTGATTTCAAATGTGAATGGTTCAACAAGTGTAGCTGATTCACCAGGTCCTGATTCTGTATCTAGTTCGAATGGTGATGAAGCTAATGCGACTGTATCAACAGCAGCTGCTAAATTATTTGCAGATATTGCAGCTGATATTCtcgaagatgaagatgaagaacaGCTGTTACAAGAGGCTCAACCACAGCAACAGACTGATATAGCAGTTCCTCCAGTATCTGGAGCATCCGCTCCTGTTCAACAAATAttagttgataataatcaacaagtATTATTAACACAACCTAGACCAATTATTGTAACACAATCacaaattcaatcgaatacaACAACTGCTGTTCTATCATCTGGTACACCGATAAAAACACAAACTGGACAAACTGTAATTGtacaaaattctaatcaacAAAGAACACCAGTTGTACTACAACCAAATACAggacaaattttattatcacaagGACTACAAGGTCAAGTACAATTAGTAGCTAGTACAACACAACCTGGTCAATATATGTTACAAACAAGTGGGGCACAAAATACTTATGTAGTAGCTCAACCTCATACAGCAGTTGTACATGGACAACCACAAACAGTTTTAGTAGCACAAACTGCACAACAACAAGGTAGCGGTactaaaactataattattttacaacaacaagcTCCACCATCATCGGCAACACATCATCAAAAAGTTATGGTTACACCGCAGGGTCAACAAGTTGTTGTTACACAAGTTCATCGGCCAGTTTTACAAACATCAACAgtaacaaataatattgtacCGGCAACTTCTGTTATAAAAACAACACCAATAACGGCtattacaacaacacaaaatactACAGTCAATGGTGTTGGgaataatgataagaaaattgatgatactAAACCGAAAGTGATTAGAGATTTAACAACACCGTTCGTTTGCGAATGGGGTGACTGTAATATAGAAACGAAGTTTAAATCTGCGAATCAGGTATATTTACATGTTTGTGAAGCGCATTGTCCTAACGGTACTGAAGAAATTGTTTGTCAATGGGAACGCTGTGATAATATGAAAAGAAAAAGATTCTCATTGATGACACATTTACATGATAAACATTGCAATACAGAagCCATGAAACAAGCCCAAACTAGACGAAAACAAATCTCACAAGGTGGTAAAGTTgatccaccaccaccaacaccaACGACTCCACATCCTGGTTACGCACCTGATGCTGCTTTACATGCAATTAAACGACATGCATTAGAATTCGTTAATCCGAAAGAATTACaaCCAAAAGCAGCACCAAAACAAGGGGCACAAATTGTGCCTGTCTCTCCGCCCAAACCTGGGCCAACTCCTACCGATCAGGATGATAATGAGGGTCCAGTGACAAAGAGCATAAGATTGACCGCATCTCTAATACTTAGAAATCTCGTCATTTACAGCAGTAATTGCAGAAgGTACTTAAAGCACTATGAGCCTCATCTAGCGAATGTAGCCCTTAGTAATGTAGAATCGTCCCGGACGATAGCCCAAGTTCTTTATGATATGAATGAAGGAACGAATAGGTGA
Protein Sequence
MATILGKDPATYPKERDGFLRDLQHFHETRGTPFRRPPIIGGKEVDLYLLYNLVISQGGWIKVNSKNGWSDVLEQLSLPKELVNGSVALKQIYLRHLDRWEKVHFLGEEADRDVNREYNHLSADLYKSSDYDKLALSLLSPLPNEQDFAINVCTLLSNDGKHTLKLEKHPRLIDYLLGHAGVFCHSSLRKLFIHCYRNIRKHSIHSFWNDVLESSEFLDLTNEDKFLVTNNIKKKDGDGDNEKMKSVMEIDDDVCDIYSELAKDSDLKNFKDCLRFKLNLEPSDKELFCLERQLGTQDYIGQRVLQITTILRNLSFIEENVPVLLQNRTFLRFLLLCASSRWGYLKNLGMDMLGNVAGEFLIKEYPNDRLAVVLLKIITNGLKSEDRAACITSLEVLNKLSQNESNEEILLKFLEVEVFEKVCSFLTIHDVMLLIYTLECLYSLSSLGERSCNLIISNHGVVDTLVSLVTVEGKSYGPKACIGMKLVETVPGGISTTTTTQSVSVTTSITTSTTTTPTASFSLINTPSSIAICSNTSISSVSSITKISSTTTTPVRTVQVTPQRLLNISPSPTTSSVTGITTTQTQSMTPQQLIQQQHAHQQAIHENEQFALAWLRANYEPCTNSKVDHQELYKQYLNSCSKIGRRGVISPLHFPRCVRSVFGGTVGPNPMKSTNSNEPQYYEGIKVRAQPLIINIQPNSNPNVTQPSLKGPNNRRKSTTISTLSTPTTTITTSSTSLSVVADNTINDQSQLSPASPILKAQLSAPPKQRDTTAPATSKGDIKSQVMAHPHLSQALLGNNNTTNANTSKENQSGQSNTSLIKSLLATKVNDCMTTVSMRTATDCQNVAQVAARQQQQRLLAQQVTTPSHSIDTNKNVTKLDASKTCRINGARQLFADNDGKREPPQPPPPPLAPLSSTSSSSSSLSSSTVTPVVAAKVKTNRVDNEDSDSTGNNSLASSSGMGTIGIGGISSTEDGDNSLTSFEGLLNGVPNIDNPLNEDSNSKDSAKVVANNEITKNKPLRLADLLEKKIEKPPPLLNGSLGKELRLGEKTLDLVENHIEKALSRDNENSHDHHYIDKRTDSSNNNNNNNNNENKPNLKRSASNDIVELEPKKPMLISNVNGSTSVADSPGPDSVSSSNGDEANATVSTAAAKLFADIAADILEDEDEEQLLQEAQPQQQTDIAVPPVSGASAPVQQILVDNNQQVLLTQPRPIIVTQSQIQSNTTTAVLSSGTPIKTQTGQTVIVQNSNQQRTPVVLQPNTGQILLSQGLQGQVQLVASTTQPGQYMLQTSGAQNTYVVAQPHTAVVHGQPQTVLVAQTAQQQGSGTKTIIILQQQAPPSSATHHQKVMVTPQGQQVVVTQVHRPVLQTSTVTNNIVPATSVIKTTPITAITTTQNTTVNGVGNNDKKIDDTKPKVIRDLTTPFVCEWGDCNIETKFKSANQVYLHVCEAHCPNGTEEIVCQWERCDNMKRKRFSLMTHLHDKHCNTEAMKQAQTRRKQISQGGKVDPPPPTPTTPHPGYAPDAALHAIKRHALEFVNPKELQPKAAPKQGAQIVPVSPPKPGPTPTDQDDNEGPVTKSIRLTASLILRNLVIYSSNCRRYLKHYEPHLANVALSNVESSRTIAQVLYDMNEGTNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01022006;
90% Identity
iTF_01366123;
80% Identity
iTF_01366123;