Scal017481.1
Basic Information
- Insect
- Stenodema calcarata
- Gene Symbol
- -
- Assembly
- GCA_963920205.1
- Location
- OY986053.1:8769411-8783835[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0018 40 5.7 0.3 21 44 139 162 127 166 0.90 2 17 0.00062 14 7.2 0.1 21 46 167 192 163 197 0.89 3 17 7.5e-05 1.6 10.1 0.5 5 46 202 243 199 249 0.72 4 17 0.00055 12 7.3 0.2 21 44 246 269 242 274 0.88 5 17 0.0014 31 6.0 0.2 21 44 274 297 269 302 0.89 6 17 0.011 2.4e+02 3.2 0.6 22 44 303 325 298 329 0.82 7 17 0.00043 9.5 7.7 0.1 23 44 332 353 326 357 0.81 8 17 0.0007 15 7.0 0.2 21 46 358 383 354 386 0.89 9 17 0.00025 5.4 8.5 0.2 21 52 446 477 434 479 0.85 10 17 0.1 2.3e+03 0.1 0.3 22 44 475 497 472 507 0.80 11 17 0.044 9.6e+02 1.3 1.5 21 46 502 527 485 533 0.80 12 17 0.025 5.5e+02 2.0 0.1 21 44 530 553 525 560 0.84 13 17 0.002 45 5.5 0.5 26 51 565 590 541 592 0.73 14 17 0.015 3.2e+02 2.8 0.0 21 46 588 613 585 618 0.90 15 17 0.024 5.4e+02 2.1 0.1 26 48 623 645 616 649 0.80 16 17 0.0017 37 5.8 0.0 21 46 646 671 643 676 0.90 17 17 0.38 8.3e+03 -1.7 0.1 25 45 678 698 672 701 0.79
Sequence Information
- Coding Sequence
- ATGGGCGTCGCCAAAGAAATCGAAAGCAAAATAGACGGCGACAGGACTAGACGAAGTATTATCACAGATGACCAGCCCTTGGAAAGAGGGTGTGATGTCATTGTTAAAGACGAACCGATCGCAGACGCTGGCGATGAAGATGATCTCCAGGACCTGACGGCTGCCTCGTCCCATTTCTTGCTGTCCGAACCCGATCGAGCTCCGTTCAATGATACGATTGACTCCTCGATTTGTGGTTTCATCACAGGTGACCAGCCCTTGGAAAGAGGGTGTGATGTCATTGTTAAAGACGAACCGATCGCAGACGCTGGCGATGAAGATGATCTCCAGGACCTGACGGCTGCCTCGTCCCATTTCTTGCTGTCCGAAACCGATCGACCTCCGATCAAGGATCCGCTTGACTTCTCGATTTGTGACGAGAAGCCGTACGCCTGTAATATCTGTGACTACAAAGCCAAACAACGCAGTCATCTGAAACGACACGTGATGGCTCACTCAGACGAGAAGCCGTACGCCTGTAATATCTGTGACTACAAAGCCAAACAACGCACTCACCTTAAACGACACGTGAAGGTTCACTCAGACGGAAAGCTCTTCGCGTGCAAAGCCAAACGACCCGATCATCTGAAACGACACTTGAAGGCTCACTCAGATGAGAAGCCGTATGCCTGCAAAATCTGTGACTTCAAAACCAAAACACGTGGTAATTTGAAACGACACCTAAAGGCTCACTCAGATGAGAAGCCGTACGCCTGCAATATCTGTGACTACAGAACCAAACAACGCAGTAATCTGAGAGATCACGAGAAGATTCACTCAGACGAGAAGCCGTACGCCTGTAATATCTGTGACTACAAAGCCAAACAACGCAGTCATCTGAAACGACATGTATTGGCTCACTCAGACGAGAAACGGTACGCTTGCAGTATCTGTGACTACAAAACCATACAACGCAGATATCTGAAACGACATGTGATGGCTCACTCAGACGAGAAACTGTACGCTTGCAGTATCTGCGACTACAAAACCATAGAAAGCAGAAATCTGAAACGACATGTGATGACTCACTCAGAAGAGAAGCCCTACGCCTGTAATATCTGTGACTACAAGGCCAAACAACGCAGTCATCTGAAACGACATGTGAAGGTTCACTCAGGTTTCATCACAGGTGACCAGCCCTTGGAAAGAGGGTGTGATGTCATTGTTAAAGACGAACCGATCGCAGACGCTGGCGATGAAGATGATCCCCAGGACCAGACGGCTGCCTCGTCCCATTTCTCGCTGTCGAAACCCGATCAACCTCCGATCAAGGATCCGCTTGACTTTTCGATTTGTGAAGAGAAGCCGTACGCCTGCAAAATCTGTGACTACAAAGCCAAGCGAAGCAGTCAACTTAAACGACACGTGAAGGTTCACTCAGatgaGAAGCCATACGCCTGCTATCTGTGTGACTACAAAGCCAAACGACGCTGTCATCTGAAACGACACGTGGTGGCTCACTCAGatgAGAAGCCGTACGCCTGCAATATCTGTGACTACAGAACCAAACAACGCATTCATCTGAAAAATCATGAGAAAATTCACTCAGatgAGAAGCCGTACGCCTGTAATATCTGTGACTACAGAGCCAAACATCGCAGTAATCTGAAAGATCACGAGAAGATTCACTCAGACGAGAAACTTGCACTGTACGCTTGCAGTATCTGTGACCACAAAACCATACAACGCAGTAATCTGAAACGACACGTGAAGATTCACTCAGATGAGAAGCCGTACGCCTGCTACCTGTGTGACTTCAAATCCAAACAACCTGGTCAACTGAAACGACACGTGAAGGTTCACGCAGACGAGAAACTTGCACTGTACGCTTGCAGTATCTGTGACTACAAAACCATAGAACGCAGTAATATGAAACGACACGTGAAGATTCACTCAGATGAGAAGCCGTACGCCTGCAATATCTGTGACTTCAAATCCAAACAACCTGGTCAACTGAAACGACACGTGAAGGTTCACGCAGACGAGAAACTGTACGCTTGCAATATCTGTGACTTCAAAGCCAAACGACGCTGTCATCTGAGAGTACACCTGAAGGCTCACTCAGGTGACCAGCCCTTGGAAAGGGGTTGTGACTTCATTGTTAAGGATGAACCGGTAGCGGACGTAGGCGATGAAGATGATCCCCAGGATCAAATGGCTGCCTCGTCCCTTTTCTCGCTGTCCGAACCCGATCGACGTCCGATCAAGGATCCTCTTGACTCCTCGCTTTATGGTGACCAGCCCTTGGAAAGAGGGTGTGACGTCATTGTTAAGGATGAACCGGTAGTGGACGTAGGCGATGAAGATGATCCCCAGGACCAGACGGCTGCCTCGTCCCATTTCTCGGTGTCCGAACCCGATCGACCTCCGATGAAGGATCCGCTTGACTCGTCGATTTGTGGTGACCAGCCCTTGGAAAGGGGTTGTGACGTCATTGTTAAGGATGAACCGGTAGCGGACGTAGGCGATGAAGATGATCACCAGGATCCGATGGCTGCCTCGTCCCTTTTCTCGCTGTCCGAACCCGATCGACCTCTTTCCCATCATTTCTGGTTGCCTCTGATCAGATGGCACCCCGCAttagaagaagacgaagaagaacaGGGTTTACAAAAGTTTTGGGAAGGCCGTTCCATCCTGACTTCTACCCCTGAGACACCTGTTTGCTCCTCCGAGCAGAACACCATTTTTGTGAGTTCGAAAGAGAATGTATCTTCTCCTGCACCGAACGACAAgtaa
- Protein Sequence
- MGVAKEIESKIDGDRTRRSIITDDQPLERGCDVIVKDEPIADAGDEDDLQDLTAASSHFLLSEPDRAPFNDTIDSSICGFITGDQPLERGCDVIVKDEPIADAGDEDDLQDLTAASSHFLLSETDRPPIKDPLDFSICDEKPYACNICDYKAKQRSHLKRHVMAHSDEKPYACNICDYKAKQRTHLKRHVKVHSDGKLFACKAKRPDHLKRHLKAHSDEKPYACKICDFKTKTRGNLKRHLKAHSDEKPYACNICDYRTKQRSNLRDHEKIHSDEKPYACNICDYKAKQRSHLKRHVLAHSDEKRYACSICDYKTIQRRYLKRHVMAHSDEKLYACSICDYKTIESRNLKRHVMTHSEEKPYACNICDYKAKQRSHLKRHVKVHSGFITGDQPLERGCDVIVKDEPIADAGDEDDPQDQTAASSHFSLSKPDQPPIKDPLDFSICEEKPYACKICDYKAKRSSQLKRHVKVHSDEKPYACYLCDYKAKRRCHLKRHVVAHSDEKPYACNICDYRTKQRIHLKNHEKIHSDEKPYACNICDYRAKHRSNLKDHEKIHSDEKLALYACSICDHKTIQRSNLKRHVKIHSDEKPYACYLCDFKSKQPGQLKRHVKVHADEKLALYACSICDYKTIERSNMKRHVKIHSDEKPYACNICDFKSKQPGQLKRHVKVHADEKLYACNICDFKAKRRCHLRVHLKAHSGDQPLERGCDFIVKDEPVADVGDEDDPQDQMAASSLFSLSEPDRRPIKDPLDSSLYGDQPLERGCDVIVKDEPVVDVGDEDDPQDQTAASSHFSVSEPDRPPMKDPLDSSICGDQPLERGCDVIVKDEPVADVGDEDDHQDPMAASSLFSLSEPDRPLSHHFWLPLIRWHPALEEDEEEQGLQKFWEGRSILTSTPETPVCSSEQNTIFVSSKENVSSPAPNDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01365768;
- 90% Identity
- iTF_01365768;
- 80% Identity
- iTF_01365768;