Scal017481.1
Basic Information
- Insect
- Stenodema calcarata
- Gene Symbol
- -
- Assembly
- GCA_963920205.1
- Location
- OY986053.1:8769411-8783835[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.3e-05 0.0088 17.7 1.4 1 23 143 165 143 165 0.96 2 18 9.7e-05 0.016 16.8 2.2 1 23 171 193 171 193 0.98 3 18 0.64 1.1e+02 4.8 0.8 11 23 204 216 202 216 0.92 4 18 2.2e-05 0.0037 18.9 1.4 1 23 222 244 222 244 0.97 5 18 1.8e-05 0.003 19.2 0.8 1 23 250 272 250 272 0.97 6 18 7.6e-05 0.013 17.2 1.3 1 23 278 300 278 300 0.95 7 18 0.00039 0.065 14.9 0.6 1 23 306 328 306 328 0.96 8 18 9.3e-05 0.015 16.9 0.5 1 23 334 356 334 356 0.98 9 18 2.3e-05 0.0038 18.8 2.1 1 23 362 384 362 384 0.98 10 18 1e-05 0.0017 20.0 0.9 1 23 450 472 450 472 0.98 11 18 0.074 12 7.8 3.8 1 23 478 500 478 500 0.92 12 18 0.00026 0.044 15.5 2.2 1 23 506 528 506 528 0.97 13 18 0.00013 0.022 16.4 1.5 1 23 534 556 534 556 0.97 14 18 2.6e-05 0.0043 18.6 1.7 1 23 564 586 564 586 0.97 15 18 0.00044 0.074 14.8 0.6 1 23 592 614 592 614 0.97 16 18 0.00031 0.052 15.3 0.5 1 23 622 644 622 644 0.97 17 18 3.4e-05 0.0056 18.3 0.4 1 23 650 672 650 672 0.98 18 18 0.0064 1.1 11.1 3.9 1 23 678 700 678 700 0.97
Sequence Information
- Coding Sequence
- ATGGGCGTCGCCAAAGAAATCGAAAGCAAAATAGACGGCGACAGGACTAGACGAAGTATTATCACAGATGACCAGCCCTTGGAAAGAGGGTGTGATGTCATTGTTAAAGACGAACCGATCGCAGACGCTGGCGATGAAGATGATCTCCAGGACCTGACGGCTGCCTCGTCCCATTTCTTGCTGTCCGAACCCGATCGAGCTCCGTTCAATGATACGATTGACTCCTCGATTTGTGGTTTCATCACAGGTGACCAGCCCTTGGAAAGAGGGTGTGATGTCATTGTTAAAGACGAACCGATCGCAGACGCTGGCGATGAAGATGATCTCCAGGACCTGACGGCTGCCTCGTCCCATTTCTTGCTGTCCGAAACCGATCGACCTCCGATCAAGGATCCGCTTGACTTCTCGATTTGTGACGAGAAGCCGTACGCCTGTAATATCTGTGACTACAAAGCCAAACAACGCAGTCATCTGAAACGACACGTGATGGCTCACTCAGACGAGAAGCCGTACGCCTGTAATATCTGTGACTACAAAGCCAAACAACGCACTCACCTTAAACGACACGTGAAGGTTCACTCAGACGGAAAGCTCTTCGCGTGCAAAGCCAAACGACCCGATCATCTGAAACGACACTTGAAGGCTCACTCAGATGAGAAGCCGTATGCCTGCAAAATCTGTGACTTCAAAACCAAAACACGTGGTAATTTGAAACGACACCTAAAGGCTCACTCAGATGAGAAGCCGTACGCCTGCAATATCTGTGACTACAGAACCAAACAACGCAGTAATCTGAGAGATCACGAGAAGATTCACTCAGACGAGAAGCCGTACGCCTGTAATATCTGTGACTACAAAGCCAAACAACGCAGTCATCTGAAACGACATGTATTGGCTCACTCAGACGAGAAACGGTACGCTTGCAGTATCTGTGACTACAAAACCATACAACGCAGATATCTGAAACGACATGTGATGGCTCACTCAGACGAGAAACTGTACGCTTGCAGTATCTGCGACTACAAAACCATAGAAAGCAGAAATCTGAAACGACATGTGATGACTCACTCAGAAGAGAAGCCCTACGCCTGTAATATCTGTGACTACAAGGCCAAACAACGCAGTCATCTGAAACGACATGTGAAGGTTCACTCAGGTTTCATCACAGGTGACCAGCCCTTGGAAAGAGGGTGTGATGTCATTGTTAAAGACGAACCGATCGCAGACGCTGGCGATGAAGATGATCCCCAGGACCAGACGGCTGCCTCGTCCCATTTCTCGCTGTCGAAACCCGATCAACCTCCGATCAAGGATCCGCTTGACTTTTCGATTTGTGAAGAGAAGCCGTACGCCTGCAAAATCTGTGACTACAAAGCCAAGCGAAGCAGTCAACTTAAACGACACGTGAAGGTTCACTCAGatgaGAAGCCATACGCCTGCTATCTGTGTGACTACAAAGCCAAACGACGCTGTCATCTGAAACGACACGTGGTGGCTCACTCAGatgAGAAGCCGTACGCCTGCAATATCTGTGACTACAGAACCAAACAACGCATTCATCTGAAAAATCATGAGAAAATTCACTCAGatgAGAAGCCGTACGCCTGTAATATCTGTGACTACAGAGCCAAACATCGCAGTAATCTGAAAGATCACGAGAAGATTCACTCAGACGAGAAACTTGCACTGTACGCTTGCAGTATCTGTGACCACAAAACCATACAACGCAGTAATCTGAAACGACACGTGAAGATTCACTCAGATGAGAAGCCGTACGCCTGCTACCTGTGTGACTTCAAATCCAAACAACCTGGTCAACTGAAACGACACGTGAAGGTTCACGCAGACGAGAAACTTGCACTGTACGCTTGCAGTATCTGTGACTACAAAACCATAGAACGCAGTAATATGAAACGACACGTGAAGATTCACTCAGATGAGAAGCCGTACGCCTGCAATATCTGTGACTTCAAATCCAAACAACCTGGTCAACTGAAACGACACGTGAAGGTTCACGCAGACGAGAAACTGTACGCTTGCAATATCTGTGACTTCAAAGCCAAACGACGCTGTCATCTGAGAGTACACCTGAAGGCTCACTCAGGTGACCAGCCCTTGGAAAGGGGTTGTGACTTCATTGTTAAGGATGAACCGGTAGCGGACGTAGGCGATGAAGATGATCCCCAGGATCAAATGGCTGCCTCGTCCCTTTTCTCGCTGTCCGAACCCGATCGACGTCCGATCAAGGATCCTCTTGACTCCTCGCTTTATGGTGACCAGCCCTTGGAAAGAGGGTGTGACGTCATTGTTAAGGATGAACCGGTAGTGGACGTAGGCGATGAAGATGATCCCCAGGACCAGACGGCTGCCTCGTCCCATTTCTCGGTGTCCGAACCCGATCGACCTCCGATGAAGGATCCGCTTGACTCGTCGATTTGTGGTGACCAGCCCTTGGAAAGGGGTTGTGACGTCATTGTTAAGGATGAACCGGTAGCGGACGTAGGCGATGAAGATGATCACCAGGATCCGATGGCTGCCTCGTCCCTTTTCTCGCTGTCCGAACCCGATCGACCTCTTTCCCATCATTTCTGGTTGCCTCTGATCAGATGGCACCCCGCAttagaagaagacgaagaagaacaGGGTTTACAAAAGTTTTGGGAAGGCCGTTCCATCCTGACTTCTACCCCTGAGACACCTGTTTGCTCCTCCGAGCAGAACACCATTTTTGTGAGTTCGAAAGAGAATGTATCTTCTCCTGCACCGAACGACAAgtaa
- Protein Sequence
- MGVAKEIESKIDGDRTRRSIITDDQPLERGCDVIVKDEPIADAGDEDDLQDLTAASSHFLLSEPDRAPFNDTIDSSICGFITGDQPLERGCDVIVKDEPIADAGDEDDLQDLTAASSHFLLSETDRPPIKDPLDFSICDEKPYACNICDYKAKQRSHLKRHVMAHSDEKPYACNICDYKAKQRTHLKRHVKVHSDGKLFACKAKRPDHLKRHLKAHSDEKPYACKICDFKTKTRGNLKRHLKAHSDEKPYACNICDYRTKQRSNLRDHEKIHSDEKPYACNICDYKAKQRSHLKRHVLAHSDEKRYACSICDYKTIQRRYLKRHVMAHSDEKLYACSICDYKTIESRNLKRHVMTHSEEKPYACNICDYKAKQRSHLKRHVKVHSGFITGDQPLERGCDVIVKDEPIADAGDEDDPQDQTAASSHFSLSKPDQPPIKDPLDFSICEEKPYACKICDYKAKRSSQLKRHVKVHSDEKPYACYLCDYKAKRRCHLKRHVVAHSDEKPYACNICDYRTKQRIHLKNHEKIHSDEKPYACNICDYRAKHRSNLKDHEKIHSDEKLALYACSICDHKTIQRSNLKRHVKIHSDEKPYACYLCDFKSKQPGQLKRHVKVHADEKLALYACSICDYKTIERSNMKRHVKIHSDEKPYACNICDFKSKQPGQLKRHVKVHADEKLYACNICDFKAKRRCHLRVHLKAHSGDQPLERGCDFIVKDEPVADVGDEDDPQDQMAASSLFSLSEPDRRPIKDPLDSSLYGDQPLERGCDVIVKDEPVVDVGDEDDPQDQTAASSHFSVSEPDRPPMKDPLDSSICGDQPLERGCDVIVKDEPVADVGDEDDHQDPMAASSLFSLSEPDRPLSHHFWLPLIRWHPALEEDEEEQGLQKFWEGRSILTSTPETPVCSSEQNTIFVSSKENVSSPAPNDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01366011;
- 90% Identity
- iTF_01366011;
- 80% Identity
- iTF_01366011;