Basic Information

Insect: Stenodema calcarata
Gene Symbol: -
Assembly: GCA_963920205.1
Location: OY986059.1:20595391-20602165[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00025 0.043 15.5 0.1 1 23 171 194 171 194 0.95

2 16 0.00049 0.082 14.6 0.5 1 23 198 220 198 220 0.96

3 16 2.6 4.3e+02 2.9 0.4 3 20 584 601 582 606 0.90

4 16 0.86 1.4e+02 4.4 0.0 3 21 684 702 683 703 0.93

5 16 0.05 8.4 8.3 1.2 2 22 707 727 706 730 0.88

6 16 2.9e-05 0.0049 18.5 0.8 1 23 759 781 759 781 0.98

7 16 0.1 17 7.3 0.3 3 23 790 811 789 811 0.93

8 16 0.013 2.2 10.1 3.9 1 23 816 838 816 838 0.98

9 16 0.0011 0.18 13.5 0.8 1 23 841 864 841 864 0.95

10 16 0.0003 0.049 15.3 0.3 3 23 869 889 868 889 0.98

11 16 1.9e-06 0.00032 22.2 2.1 2 23 896 917 895 917 0.96

12 16 0.00015 0.025 16.3 0.4 1 23 923 945 923 945 0.97

13 16 0.0023 0.38 12.5 2.7 1 23 950 972 950 972 0.99

14 16 5.7e-05 0.0095 17.6 2.7 1 23 976 998 976 998 0.99

15 16 3.1e-06 0.00053 21.5 0.1 1 23 1004 1026 1004 1026 0.98

16 16 0.025 4.1 9.3 2.9 1 23 1032 1055 1032 1055 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00025	0.043	15.5	0.1	1	23	171	194	171	194	0.95
2	16	0.00049	0.082	14.6	0.5	1	23	198	220	198	220	0.96
3	16	2.6	4.3e+02	2.9	0.4	3	20	584	601	582	606	0.90
4	16	0.86	1.4e+02	4.4	0.0	3	21	684	702	683	703	0.93
5	16	0.05	8.4	8.3	1.2	2	22	707	727	706	730	0.88
6	16	2.9e-05	0.0049	18.5	0.8	1	23	759	781	759	781	0.98
7	16	0.1	17	7.3	0.3	3	23	790	811	789	811	0.93
8	16	0.013	2.2	10.1	3.9	1	23	816	838	816	838	0.98
9	16	0.0011	0.18	13.5	0.8	1	23	841	864	841	864	0.95
10	16	0.0003	0.049	15.3	0.3	3	23	869	889	868	889	0.98
11	16	1.9e-06	0.00032	22.2	2.1	2	23	896	917	895	917	0.96
12	16	0.00015	0.025	16.3	0.4	1	23	923	945	923	945	0.97
13	16	0.0023	0.38	12.5	2.7	1	23	950	972	950	972	0.99
14	16	5.7e-05	0.0095	17.6	2.7	1	23	976	998	976	998	0.99
15	16	3.1e-06	0.00053	21.5	0.1	1	23	1004	1026	1004	1026	0.98
16	16	0.025	4.1	9.3	2.9	1	23	1032	1055	1032	1055	0.97

Sequence Information

Coding Sequence: ATGCTGAGCGTTCAGAGAAGAACCTCCCTCAAGGAGGACCCGAGCAGCAGGCCGGACAATGTCAAGAAGAAAGAGTATCCGTGCTTTCTCTGCAACGCCAAGAGCACGGATAAAGGGATTCCTCTACTCGTGAGTCAGACCACGTTCTCGAGGATCTGCTTGGGCgaaaaacttcaagaaatccTTGGCGAGAAATTCATCGTACTCATAACGTCAAAAGATGCCATTTGCTGGAAGTGTGCGAAGTACATCAATTGGGTGGACAAATGTGAGAGGAAACTGGATGTCGCTCGAGGCAATATCGTTAATATGGTGGTCACCAAGTATAAAAATGCGGAAATGGACATTCATAGCATCTCTCCTAAAGAACGGTCCCAGAAACTCCACAGCGGTTCTTCCACGACTGTGAATTCTACAAGTACAAGTCAGGAActtaaaaattataaacctgGAAACTTTAGTGATtatgttggtggCTCCGAGAAGCCCCGAGAAGACAAGAAGAGAGCTTACGAATGTCATGTCTGCACGAAAGTATTTGCATCGCCAGCTGCTCTTGGAGTTCATAAAGCAAGGCAACACCCGATCCATCACATTTGTGATTATTGTGGTTTGTCTTTGTCTACCGAGGCCAAATATAAGGCCCATATGGCGAAACATGCCCCTAAACCTGGTCCTATCTCTAACAAAATGTTGAATTGTGTTTCATGTGGTTTTCAAACAAGGAATATGGAGACGTACTGCAGACACACTTGTGATTCCAAGATTGTATCCTTGGTTTGTACGTCGTGTCGCAAAAGATACATTCACAATAAGACGACAAACCGTATTCCGGGTAAGAACTTGTGCTCGGATTGTATTAGTGTAGAAGACATACAGCCTCAAATCCAAGCAAATCAAACGTCTCATCCAATGATGAGCTCTAACAATCAGTACACAGCACAGCATCTGTATCAGAATTCGGCTCAACTGATGTCTCAGCAATCTTCACTCAATCAGGTTCAGCCTGTTTTGCAGCAGCTGTCTCACAATTCGTCGACAAGTAGTCAACCGCATACGACAAGAGAAGAAACTATTTTGCCACAGGTAGATAATGTAGTGGATCCTTTAGCTTTGGATGTAGAACCCATCGCGGAAGGTCAAACTACAGACACTCCCGAAGGAATGATAACTCTGGCTGACATAGGTGAAATAGCCCATGATTTCGTAGCAGTTGTAGATtcgaaaaaccttcaaaacccCGAGGGCGATTCAAATCACTACGAGGATCCGACTAGCACCGTCGAAGATGGCAATCAAGGTGAGACTATTATATCTACGGATCTTCACAACGAAATGCCCGAATTTTTTCGACCCCCTCAAGAGAAACGCCTGTCAGACCAAAGCATGCCAGAGAACAGTGAAGAGGTCGTGGAAAACTCTGAGCTAATTGAGACTGAAGGGGAACTCATACTTCCTGTAGATAGCGGTTCTCTTTTCAAATGTGCCAGCTGCCAGGAAGAATTCGATATTGACCAAGTGGCTACTCATCCGTGTTTTATCAATGCAGATACTGACTACGTTGAAGATGACGTTGACTCGGATTACATACAAATCCCTGTTTACGATGACCAGCAAGAAACTCTGTTGGCCGTCAATGGTGGCGAAGTTATTCGTAGGGAGAGGCGAGTAAATAGGAGGCGGATACCCAAGATACCTGCACAAGAGAACGCACATTACACTCAAATAGAACCAGAGACGAAAATGCACTGCAAAACATGCTACGCGGAATTCCGAACCATCGGCCTGATGAGGCAGCACTGGGATCTGACAGGACACTCCAGGGAAGTATCCACAACTACGATCGAACTCAACAAAATCAAAgacaaaaacaataaaaccgAACAAACTTTCAAAGTTGTTAAACAGAACTTCAACATTCGAGCTAACGTAGTTGGACAAAATGACGAAGACATCAGAAGGACTGATGAACAATTAAATAATTGTATCATCAAAGTGAAGGAATCCCCGACAATTGAAGAATTCATGCTGAAGAGGGAAGGAAAGATGTGTAGTGCTTGTGGCATCATTTTTGGAGACGAAGAACTACTTGCTGAGCATCAATGCAATAATTGTTTAACATGTGTGGCGTGTCATATCACCTTCATGGATAGCAAGTTGCTGAAGAAACACTATCAATATACTGGGCATGCAACGAAATTGTACAAGAGATCATCTGGAGTTCCGGATTCCCCGCAAGCTCTACCGGTCGTTGAGCATCCCGTAGTGGATCCTTATTTCTGCCCTAAATGTAATAAAACCTTCCCAGCACGACTCGCTTTGAGTAAACATCTTCGAACTCATTTCAAGGGTACGAATGGGGGTGCATGCCATTACTGCTTATTAGAATTCGAAGATAAATCCATGATACAACAACACGTCCTTGAAGCTCACGGTGCCTACCTGTACAAATGTGATCACTGTGACCGGGCGTTCCTCACCAAATCTGTTCGAAACAAACATCAACTGAAGCATATCATTCACATGTGTCAAGTTTGCAAAGTTAAATTCGCCAATCGGAGGCTGTTGATTGTCCACATGGATAAAGTTCACAGGTCGAAAGCTTGCAGAATATGTGGCAAAATGATTACAGATCTGTACGCTTTGAGGAAGCACGAGAGGAGACATTACTACGATACAGGTCTCAAATGCGATTTCTGCGATAAATCGTTCAGAAACAAATCTTCGTTGAGAGCTCACAATAGACTTCACGATGGAGAGGCCTTGTACAAGTGTAAAACCTGCCAAATGGGATTCAAGACTCCGCGAAGCCTCGAGGACCACGAGATCGTTCATATAAAGAAGCATTACACTTGCCCCAAATGCTCGACCGTTTGCCCTTCGAAGAATTTCTACTGGATGCACATGAAAATGCACGATTTGGCCTACAAGTGCAGCGTGTGTGGCAGGATGTTCCGGGACACCTGTCTGCTTGCTATTCACAAGAGGAAACACTTTCGAGCGAGGCCTTACCAATGCCCCCGATGCCCGAGGGTGTTCTCTGTGCCTGCAACGCTCCGCCGACATCTCACTGTCCATACCAGAACTTTTCCATTCAAGTGTGGCTTATGCAAGAAAGGCTTCCTCACGAAGTACGCGTACCACAAACACTTGGACACTGTGCACGCCGTCAGGAACACTGAACCGCGACGCATTCTCAACCGCATCCCGTCGCTACCTCTCAACGCGACGGACGAGGACCTCCTTCAAGCTGCAGACACCTTCATCTCAAATGACGCTATCATGTTCAATGAATATCAAAAGGACATCACCATCGAGCAGGTTCCCTCCAGCGACATGATCACCGAGGAAGTGGTCGTCGAGACTACTGAACTCTTTGACGAAATACTTCACTAA
Protein Sequence: MLSVQRRTSLKEDPSSRPDNVKKKEYPCFLCNAKSTDKGIPLLVSQTTFSRICLGEKLQEILGEKFIVLITSKDAICWKCAKYINWVDKCERKLDVARGNIVNMVVTKYKNAEMDIHSISPKERSQKLHSGSSTTVNSTSTSQELKNYKPGNFSDYVGGSEKPREDKKRAYECHVCTKVFASPAALGVHKARQHPIHHICDYCGLSLSTEAKYKAHMAKHAPKPGPISNKMLNCVSCGFQTRNMETYCRHTCDSKIVSLVCTSCRKRYIHNKTTNRIPGKNLCSDCISVEDIQPQIQANQTSHPMMSSNNQYTAQHLYQNSAQLMSQQSSLNQVQPVLQQLSHNSSTSSQPHTTREETILPQVDNVVDPLALDVEPIAEGQTTDTPEGMITLADIGEIAHDFVAVVDSKNLQNPEGDSNHYEDPTSTVEDGNQGETIISTDLHNEMPEFFRPPQEKRLSDQSMPENSEEVVENSELIETEGELILPVDSGSLFKCASCQEEFDIDQVATHPCFINADTDYVEDDVDSDYIQIPVYDDQQETLLAVNGGEVIRRERRVNRRRIPKIPAQENAHYTQIEPETKMHCKTCYAEFRTIGLMRQHWDLTGHSREVSTTTIELNKIKDKNNKTEQTFKVVKQNFNIRANVVGQNDEDIRRTDEQLNNCIIKVKESPTIEEFMLKREGKMCSACGIIFGDEELLAEHQCNNCLTCVACHITFMDSKLLKKHYQYTGHATKLYKRSSGVPDSPQALPVVEHPVVDPYFCPKCNKTFPARLALSKHLRTHFKGTNGGACHYCLLEFEDKSMIQQHVLEAHGAYLYKCDHCDRAFLTKSVRNKHQLKHIIHMCQVCKVKFANRRLLIVHMDKVHRSKACRICGKMITDLYALRKHERRHYYDTGLKCDFCDKSFRNKSSLRAHNRLHDGEALYKCKTCQMGFKTPRSLEDHEIVHIKKHYTCPKCSTVCPSKNFYWMHMKMHDLAYKCSVCGRMFRDTCLLAIHKRKHFRARPYQCPRCPRVFSVPATLRRHLTVHTRTFPFKCGLCKKGFLTKYAYHKHLDTVHAVRNTEPRRILNRIPSLPLNATDEDLLQAADTFISNDAIMFNEYQKDITIEQVPSSDMITEEVVVETTELFDEILH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00386625; iTF_00884502; iTF_00145850; iTF_00930623;
90% Identity: -
80% Identity: -