Sfru008468.1
Basic Information
- Insect
- Spodoptera frugiperda
- Gene Symbol
- run
- Assembly
- GCA_011064685.1
- Location
- JANIPB010000988.1:609955-617353[-]
Transcription Factor Domain
- TF Family
- Runt
- Domain
- Runt domain
- PFAM
- PF00853
- TF Group
- Beta-Scaffold Factors
- Description
- The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia [1]. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene [1]. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction.In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-31 1.1e-27 96.5 0.0 2 69 21 88 20 89 0.96 2 2 9.9e-19 4.6e-15 55.7 0.1 91 129 90 128 88 128 0.97
Sequence Information
- Coding Sequence
- ATGCACCTCCCGCACGCGAGCCCTCCGGCCCCCAGCATGGCGGACGTTTATGCTCATATCCATGAGTACTACCGGCAGAGCCACGGTGAGCTGGTGCAGACCGGCTCCCCAGCCGTGCTGTGCTCTGTGCTGCCTGGCCACTGGAGGTCCAACAAGTCGCTGCCAGTTGCCTTCAAGGTGGTGGCCCTGGATGATGTGCAGGATGGCACCTTGGTCACGATCAAGGCTGGAAATGATGAGAATTCTATGGCAGAATTGAGGAAACTTGGCCGAGGGAAGTCATTCTCGCTGACCATCACCATCAGCACCTTCCCCAGCCAGGTGGCCACCTACATGAAAGCCATCAAAGTCACCGTCGATGGACCGAGAGAGCCCAGAACTAAACAAAATTATGGCTACGGTCACCCGGGTGCATTCAGCCCGTTTCTGTTGAACCCCGGCTGGCTGGATGCGGCGTACCTCAACTATGCGTGGGCTGACTACTTCAGGCCGCCGCAAATGCGAGACCAGACCGCCTCGCTTGTAAAAGGTGGTCCAGGCGCAATAACTACACCCCCAGTGACGTTACCAGGAGCAGAACTCTTCCCCTTCGCACCAGCGATGGCTAACTTGCCAACAGGAGGCTTAATACCACCTCCTGGTGCATTCTTACCACCGAATGGTCTCCTTCCTTTCGGTCCACATCCAGCAGACCTAGCAATGAAGTCATTACCACCCGAATTATCACTAAAGAGCAGCATCAGTCCATACGAAGCGTTGAGACACTTACAAAGCAACGTTTCCTCAATGGATACATCGAGTGCTAGACTTTCTCCAACAAGCAGTAGACAAAGTGGAAGCCCAAGAAGTATTGCCAATGCTAGCCCTGACAGATCTAAAGCTGATTCAAAATCTGAGGTCAATTCGATGCACGATGCGACAATTACTGATGAATCTGATGAAGAACCTATTGAAGTAGTAAAGTCAGCATTCCATCCGACGCGACCAGCGAATGTTGAACTGCAGGAGATGAAGCGAGTGCAGGCAGCCGACTCTACAGTGGCGGACAGACCACGCGTCCGCAACGAACTGAAGGCACCTTCCCAGCGCGGCGCACGAGTTCTTTCCTCTAGTCCTACTTCTACCAAGATCTCAAACGGCACGATACCGACACATAAATCAGTATGGCGCCCGTATTGA
- Protein Sequence
- MHLPHASPPAPSMADVYAHIHEYYRQSHGELVQTGSPAVLCSVLPGHWRSNKSLPVAFKVVALDDVQDGTLVTIKAGNDENSMAELRKLGRGKSFSLTITISTFPSQVATYMKAIKVTVDGPREPRTKQNYGYGHPGAFSPFLLNPGWLDAAYLNYAWADYFRPPQMRDQTASLVKGGPGAITTPPVTLPGAELFPFAPAMANLPTGGLIPPPGAFLPPNGLLPFGPHPADLAMKSLPPELSLKSSISPYEALRHLQSNVSSMDTSSARLSPTSSRQSGSPRSIANASPDRSKADSKSEVNSMHDATITDESDEEPIEVVKSAFHPTRPANVELQEMKRVQAADSTVADRPRVRNELKAPSQRGARVLSSSPTSTKISNGTIPTHKSVWRPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00677312;
- 90% Identity
- iTF_00280905;
- 80% Identity
- -