Sexi006694.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- PAXBP1
- Assembly
- GCA_011316535.1
- Location
- CM022061.1:15620304-15647216[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.75 8.6e+03 -3.6 0.5 60 110 74 121 63 124 0.69 2 2 9.9e-18 1.1e-13 51.7 0.1 3 190 521 688 519 701 0.81
Sequence Information
- Coding Sequence
- ATGTCATTGTTTCGAAAGCCGAAAAAAATTCAACGTCGTATGTTTTGTGCTGATGATGACGAGGATGGGGAACCCGAGGCGCCGCCGCCACCAGTCATCAGTCaggaaaaagaaaaggaaaagaaaGAAGTCAAATCAGTGAAGAGTACTACTCTATTGAGTTTCGCTGACGAAGaGGAAGAAGGAGAAGTTTTTAAAGTGAAGAAGTCATCTCAAAGTAAAAGACTGGCTaagaagagagagaaagaaaaacAGAAGAAAGATGTGAGAACAGATGGTGATAGTTACAAATATGAGAGTAGCATGCCGGAGGAAAAGAACAACCACACAGAGGAGAATAGTGAGAAACCGAAACCGAAGAAGAAGGTGACGTTAGAGGGGCTGATACTGTCCGGACGGGAGGCGCTGGCAGCAGACGGGACGGGAGACGTGTCGGACGACAGCGCGGGCGCAGACGAGGAGGCCGAGGAGGACGAAAGGGGGTTCCATCGGTACCGCGCGGAGTCCGTGAGAGCTGCGCTGTTGGGGGCGCCGGGCCGCATTCCTGACGCCGCGCTCATCCACGCCGCACGCAAGACCAGACAGCAGGCTCGCGAATTAGGCGGAGACTATATTCCGGTGAAGCCGTCAGAGTCGGGGCCTGGGTCACGGCTGGTCAGAGATGATGGCTCTGGTGACGATGAAGAGGAGGGCAGAATACTTGTCAGAGGGCTAGACCTTCCTAGTGATAAGCCCAAACGTGGCACGGCAGCGGCGTCAGAGGAAGAACTGGACAGCGAGGCTGAGGAGTGGGAGGAGCAGCAGTTACAGAAAGCGAGGCCCGTCATCGTGGATCTATCTGGTGAGGGTGTTATGGACGTGAATCCGTTCTCTGTAGCTCTGCCTGCACCTCAGATGTCGGCTCCAGAGCATCTACGACCACTCACAACGACAGACACACAACCACCAACAACGGCTAACGAACTTGTAGATGCACTTAAGAAACGATTGGAAGAGCTTCAAGTCGAGAGGGACGTAACGTTAAACACACAGAAAGAGTTGAAGGAGAGGTTGTTGACCTCGGCCCGGATACGGGAGAGTCGGGCGTCGCGCTGCGGGGAACTGGACGCCGCGTACCGGCGCGCGCAGGCCATACGCGGGTACCTCACCGACCTCATTGAGTGCCTCGATGAGAAATTGCCCCAGCTGGAGGCGCTGGAGGCGCGCGCGCTGGCGCTGCACCGGCGACGCTGCGAGTTCATCATCGAGCGCCGCCGCGCCGACCTGCGCGACCAGGCGCAGGACGTACTCGCGCCGCCCGGTCGGGCCACAAAGGCGACGGAGAACGAAGAGAAGACGCGACGGGCAGCGGAGCGCGAGGGGCGGAGGCGCGCGCGCCGCCTCAAGCGGGAggcggccgccgccgccgccggcgcCGCCCTGCCGCACCGCGACGGGGACTCCTCCGACGACGACCTGCCCCCACACGAGCTGCACCACTACACGCAAGAAAGGGAGAGCATCCGCGCGGCGTCCCGCGCGTTGTTCTGCGACGCGCTGTTCGCGTGGCGCAGCGCGCGCGGCGTGGCGGCCCGCctggcgcggtggcgcgccggGGCGGCCGCGCTCTACGCCGACGCCTACCTGCCGCACTCGCTGCCCAAGCTGCTCGCGCCCTACGTGCGGCAcgagTTAATACTCTGGAACCCGCTCGCAGACGAAGACAATGAAGACTACGAGAAGATGGATTGGTACAAATCTCTGATGATGTATGGCGTTCGGTCTGATCGATCAGGCCACGACTCCTCGGAGTCCGCGTCGGACGAGGAAATAGAGCCGGTCCCCGTGACCGAGAACTCCGTCAGGGAGGACCCGGACCTCATGCTGGTGCCTACCATCATTAATAAGGTGGTGCTGCCCAAACTTAcagAGTTGGTGCGTGACGCGTGGGACCCGCTGAGCGTGCGCGCGTGCGTGCGACTACGCGCGCAGATGACGCGCGCGGCGCGCCTGCCCGCCGCCACGCCCGCGCTGCGCTCGCTCGCCGCCGCCATACGCGCGCGACTCGCGCACTCCCTCGCCGCAGACGTCTTCCTGCCCACGCTTCCCCCCGCTATACTGGAGGGCCCGGGCGCGGTGTTCTGGCGTCGCTGCCTGGGCGCCGGCGTCCGCCTGGTGCGCGCGACGCTGTGCCtggccgcgccgcccgcgctgCTGCGTCCCGACCCACTCGTGCTCGCACTCATCGACACACTATGtacgggcgcgggcgcggcgggcggGGCGCACATGTCGCGCGCCGCCAGCGCCCTGAGCGCCGCCCTGCCGCGCGCCGCCGGGGGCGCCGACGACCTGCGCCGCCGCGCCCTGCGCCGCCTCGCCCAGCTCGCCGCGCTCGCGCTGCAGCGACTCGACGCCGACAACCCCATGCATTTGAAAGCGATAGAACAAGCGCGAGCAGTACTCGCAGAAGCACGAGCGGTTGAATGA
- Protein Sequence
- MSLFRKPKKIQRRMFCADDDEDGEPEAPPPPVISQEKEKEKKEVKSVKSTTLLSFADEEEEGEVFKVKKSSQSKRLAKKREKEKQKKDVRTDGDSYKYESSMPEEKNNHTEENSEKPKPKKKVTLEGLILSGREALAADGTGDVSDDSAGADEEAEEDERGFHRYRAESVRAALLGAPGRIPDAALIHAARKTRQQARELGGDYIPVKPSESGPGSRLVRDDGSGDDEEEGRILVRGLDLPSDKPKRGTAAASEEELDSEAEEWEEQQLQKARPVIVDLSGEGVMDVNPFSVALPAPQMSAPEHLRPLTTTDTQPPTTANELVDALKKRLEELQVERDVTLNTQKELKERLLTSARIRESRASRCGELDAAYRRAQAIRGYLTDLIECLDEKLPQLEALEARALALHRRRCEFIIERRRADLRDQAQDVLAPPGRATKATENEEKTRRAAEREGRRRARRLKREAAAAAAGAALPHRDGDSSDDDLPPHELHHYTQERESIRAASRALFCDALFAWRSARGVAARLARWRAGAAALYADAYLPHSLPKLLAPYVRHELILWNPLADEDNEDYEKMDWYKSLMMYGVRSDRSGHDSSESASDEEIEPVPVTENSVREDPDLMLVPTIINKVVLPKLTELVRDAWDPLSVRACVRLRAQMTRAARLPAATPALRSLAAAIRARLAHSLAADVFLPTLPPAILEGPGAVFWRRCLGAGVRLVRATLCLAAPPALLRPDPLVLALIDTLCTGAGAAGGAHMSRAASALSAALPRAAGGADDLRRRALRRLAQLAALALQRLDADNPMHLKAIEQARAVLAEARAVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00851821;
- 90% Identity
- -
- 80% Identity
- -