Sexi002960.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022060.1:12881941-12923481[-]
Transcription Factor Domain
- TF Family
- AF-4
- Domain
- AF-4 domain
- PFAM
- PF05110
- TF Group
- Unclassified Structure
- Description
- This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental disabilities [1]. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-13 7.5e-09 35.7 0.2 4 110 29 135 27 173 0.70 2 2 1.2e-05 0.27 10.8 0.3 346 382 172 208 154 226 0.79
Sequence Information
- Coding Sequence
- ATGTTACAATTGTACGACAAGTGGGACCGGGACAGGGGCGGGGGGAgcggcggcgggggcgcgcCGGCCGCCTGGCCCGGCCGCGACCGCGAGCGCGACCGAGAGCGCGAGCGGAAGGCGCGCGCGCACCAGATGTCGCAGGCGCACGCCGCCGAGCCCGACGCATCGTCGCTCTTCCCGGCGCCGTTCAGGGTGACAGGCAACAGGGATCGCGTGAGCCAGCAGATACAGACCAAGCTCGGCGACTACCACCTCGCGCAGTGGTTCATCGATGACCCCAGTAAATCAATTGGGATTTGCGCTGAACCACCCAGTCCTGCAccatGTCTACCATCACGGCGAGAGAGCGAGTTCAAGAAGCCGGCTCACGCCCCCCAGAACGGCGTCCGCCATCACCGCCCCCATATCCCACACAGCAAGAGCGATGGTTCCGGTTCGACGGGAGCCCCGCACAGGCCGCCCCCCATAAGGATACCCAACGGTATCCAGTCACAGaaTGCTATCGATAGCAGTCAACCGCCAATAGAAAGTATTTTAAAGGAGATGAAGTCTCTGCCGACGCCGTTGTCTGTGATAGCTGCGACGCCAAGAAAAGAATTGGAGAACAAATTCATCTTCAACCCCTACACAAATAAGGTCCAAGAGAACCCTCAGTTGGCCGTCAACGATCTCAAAACACCCCTACCCAAACCCG
- Protein Sequence
- MLQLYDKWDRDRGGGSGGGGAPAAWPGRDRERDRERERKARAHQMSQAHAAEPDASSLFPAPFRVTGNRDRVSQQIQTKLGDYHLAQWFIDDPSKSIGICAEPPSPAPCLPSRRESEFKKPAHAPQNGVRHHRPHIPHSKSDGSGSTGAPHRPPPIRIPNGIQSQNAIDSSQPPIESILKEMKSLPTPLSVIAATPRKELENKFIFNPYTNKVQENPQLAVNDLKTPLPKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00783494;
- 90% Identity
- iTF_01441108;
- 80% Identity
- -