Basic Information

Insect: Spilosoma lubricipeda
Gene Symbol: -
Assembly: GCA_905220595.1
Location: HG992301.1:6027719-6029461[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0014 0.14 13.7 2.3 1 23 9 31 9 31 0.96

2 15 0.086 8.4 8.0 0.0 2 20 59 77 58 78 0.91

3 15 0.0024 0.24 12.9 2.3 1 23 101 124 101 124 0.96

4 15 3.1e-05 0.003 18.9 0.5 1 23 129 152 129 152 0.96

5 15 0.00035 0.034 15.6 0.7 1 23 157 180 157 180 0.96

6 15 0.00023 0.022 16.1 1.0 2 23 183 205 183 205 0.97

7 15 0.022 2.2 9.9 1.8 2 20 213 231 212 233 0.92

8 15 0.00062 0.061 14.8 2.2 1 23 285 308 285 308 0.93

9 15 1.3 1.3e+02 4.3 0.0 2 23 381 404 380 404 0.88

10 15 8.9e-06 0.00088 20.6 0.2 3 23 411 432 410 432 0.94

11 15 0.00064 0.063 14.7 2.8 2 23 437 459 436 459 0.94

12 15 0.00027 0.026 15.9 5.1 1 23 464 487 464 487 0.96

13 15 3.1e-06 0.00031 22.0 4.0 1 23 491 514 491 514 0.98

14 15 0.00012 0.012 17.0 0.3 2 23 521 542 520 542 0.96

15 15 8e-06 0.00079 20.7 1.4 1 23 548 570 548 570 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0014	0.14	13.7	2.3	1	23	9	31	9	31	0.96
2	15	0.086	8.4	8.0	0.0	2	20	59	77	58	78	0.91
3	15	0.0024	0.24	12.9	2.3	1	23	101	124	101	124	0.96
4	15	3.1e-05	0.003	18.9	0.5	1	23	129	152	129	152	0.96
5	15	0.00035	0.034	15.6	0.7	1	23	157	180	157	180	0.96
6	15	0.00023	0.022	16.1	1.0	2	23	183	205	183	205	0.97
7	15	0.022	2.2	9.9	1.8	2	20	213	231	212	233	0.92
8	15	0.00062	0.061	14.8	2.2	1	23	285	308	285	308	0.93
9	15	1.3	1.3e+02	4.3	0.0	2	23	381	404	380	404	0.88
10	15	8.9e-06	0.00088	20.6	0.2	3	23	411	432	410	432	0.94
11	15	0.00064	0.063	14.7	2.8	2	23	437	459	436	459	0.94
12	15	0.00027	0.026	15.9	5.1	1	23	464	487	464	487	0.96
13	15	3.1e-06	0.00031	22.0	4.0	1	23	491	514	491	514	0.98
14	15	0.00012	0.012	17.0	0.3	2	23	521	542	520	542	0.96
15	15	8e-06	0.00079	20.7	1.4	1	23	548	570	548	570	0.97

Sequence Information

Coding Sequence: ATGCCTTTCAAATGGCGGGGCAAATACCTATGTTTCTATTGCGGCAAGAACTATACAGAATACCCAGAATTTAAAAAGCATACAAAATCTCATGGATTATGTAATACTCAAGATTATTCCCTAAAGTTAATCAAGGGcaataatattgaaatcaaAATAGATGTTTCTGAAATCGTTTGCGATATATGTAGTGAAACATTCAATAGATTTGAAGAAATCATTGATCATTTGATATGTAAACATCAGTTGGAATACAACAAAAGCATTGATGTGCCATTCCAAGAATATCGATTAGTTGATTTTAAGTGTCTTCATTGCGAAGAACGGTTCTCTTATTTCGGATATTTAATAACGCATGTTAATAACATGCATCCCCAAAACTGTTTCATTTGCGACGATTGTGGTGgtcgttttaataaaaagagGGATTTAACTATTCATATACGGAATTATCACCGACTAGGAGGGTATCCATGTGATCTGTGCTTGCAAAGTTTTGACACTTATCAGACTTTGCGAAGACATCAAAACAATGCACATTACAGGCAGTGCAAAAGCTGTGGATCAAAATTTGCATCTCTATCACTTCTGCAGAAGCATTTAAAATCTGAACATCCTCATGATGACGGCAACTTAAAGTGCCGTTATTGCTCTAAAGAGTTCCATTCATCTATAGGCTTAAAGCAGCACACAAGCAAGTGTAAAGTGAAAAGAATCTCACAAGCGGATACAAAATCTTTCGCAGAAGATAATATTGAACCGAGAAAGAAGCAAAATATCCTACAAATTCGTCAAAACATACAATGTGTATTAAATATGTCGACGGCAGTTCCTTTTAAGttcttttctaaatattctTGCTTTTACTGCTCGAAGAAATTCTATGATTTCGACGATTTACGTCAGCATACGAGCGCTGAACATCCAGTATGCGACTTAAAACAAAAGTGCATGAAAAAGTGTAAAGGTGAAAGAATAAACGTTAAGATTGATATATCAGATTTAGCTTGCAAAGTGTGTTGTCTTCCAGTAGTAGATTTAGAGACTTTAATCACGCATTTAATAGACGAACACAAAGTAAACTATGATAAGACCATAACTGGATGTCTTGAACCTTTTCGGATCATAAAAGATAATATTCCCTGCCCAATATGTCCTGACAAGGTATTCCGCTACTTCGGAATTCTATTACGTCACGTGAACGCAGAGCATAGTAACAATAACAGGATTTGTGACTTCTGCGGCCGAAGTTTCAGAAATGCGGCGAATTTAAATGTTCATATAACATATTCGCACACAGGGTCGTGTGAGTGCGATGTGTGtggtattaaatacaaaaaccaATGGTCTCTAGCCAGACATAGGGCTAAATGCCACAACGCGAAAGATCATAAATGTCCAAAATGCCCAGAGACTTTTAATTCACAGTATCACAAACAGAAACATCTGATAAAAATGCACGATATAGGTCACAAGTGTGATTACTGCGATAAGATGTTCACTAGAAATTCTTTCATGAAGGATCATATTAGACGGATTcatttaaaggaaaaaaacgtTCCCTGTTCTATTTGTAACGAGAAATTCTTTGATAACTATCTTTTAAAGATGCATATGGTTAAGCATGAGGGTGATAGGAAGTTCTGTTGCTCCGTATGTGGCAAGGCGTTCTTGAGAAAGAGCAATTTGGCTTCGCATATGGAAATGCATAAGAAGTATGGTCATGTTCAGTTGCAAATTTGA
Protein Sequence: MPFKWRGKYLCFYCGKNYTEYPEFKKHTKSHGLCNTQDYSLKLIKGNNIEIKIDVSEIVCDICSETFNRFEEIIDHLICKHQLEYNKSIDVPFQEYRLVDFKCLHCEERFSYFGYLITHVNNMHPQNCFICDDCGGRFNKKRDLTIHIRNYHRLGGYPCDLCLQSFDTYQTLRRHQNNAHYRQCKSCGSKFASLSLLQKHLKSEHPHDDGNLKCRYCSKEFHSSIGLKQHTSKCKVKRISQADTKSFAEDNIEPRKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFYDFDDLRQHTSAEHPVCDLKQKCMKKCKGERINVKIDISDLACKVCCLPVVDLETLITHLIDEHKVNYDKTITGCLEPFRIIKDNIPCPICPDKVFRYFGILLRHVNAEHSNNNRICDFCGRSFRNAANLNVHITYSHTGSCECDVCGIKYKNQWSLARHRAKCHNAKDHKCPKCPETFNSQYHKQKHLIKMHDIGHKCDYCDKMFTRNSFMKDHIRRIHLKEKNVPCSICNEKFFDNYLLKMHMVKHEGDRKFCCSVCGKAFLRKSNLASHMEMHKKYGHVQLQI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00869876;
90% Identity: iTF_00636748;
80% Identity: -