Slub022748.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992292.1:8602722-8604491[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-11 2e-08 34.8 0.0 3 39 16 53 14 56 0.91
Sequence Information
- Coding Sequence
- ATGCCACGACGTTACCAAAGGAAGACTGAGACCAAATACAAATTAGAAGATTTAGAAAAAGCCGTTCACGATGTAAGGAACAAAATACTGTCGTTAGGAAAGGCATCTATTATTTATTCTGTTCCAAAAAGTACTATACATGACTATCTcaagaaagaaataataaatgaacCTAAAACTGGAAGAAAAGCTATATTTACTGATGCACAAGAAACTGAATTAGAACAACATATAATTAAATGCAGCAAAGTATTTTATGGCTTAACAATAGAAATGGTGCGaaaaatagcttttaaattTGCAGAAGTGAATCAATTGAAACATAATTTTGACAAAACATCTCAAATGGCAGGAAAAGACTGGTTTTATGGATTTAAAAAGAGACACCCTGAAATTTCGCTTCGTAAGCCTGAGTCTACTTCTATCAATAGAATAACAGCGTTTAATGAAACggaggtaaaaatattttttaacaatttagaAGCCGTGCAAGCAAAATATCACTTTGATGGTAATCGTATTTACAATGTGGACGAGACCGGTATTTCTAATGTCCAAAGGAATTCAAGAATTTTGGCGCCAAAAGGTCAAAAACAAGTCGGTATGGCAACAAGTGGTGAACGAGGCACGACAACAACAGTTGTTTGCGCATTCAGTGCTTCTGGAAGGTATGTTCccccattttttatttttaaaaggaagCGAATGAATGCTCATTTGTTGCGAGGAGGCAATGCTGACATGATCGCAGCAGTTAGCGATTCTGGTTGGATTAACGAGCACCTATTCGTGGATTGGTTACATCATTTCATATCTTTTGCTAAACCAACTCTTGAAGAACCAATTTTGCTTATCCTAGACAACCATGAAAGCCACATTAGCCTTGCTTGCTATCTGCTTTGTCGCCAGAGTGGAATAATATTATTGTCTCTTCCACCTCATACATCCCATCGCATGCAACCACTAGACCTAACATATTTCGGACCCATTAAGACTGCTTATAATAGAGAATGCGACTTATACATGGCTTCAAATGTGGGCCGAAAAATTACACAGTATGAGGTCGTAGAACTTTTTACGAAGGCTTTTAACCGCATCAGCAATATAGAGAAAGCAGCAAACGGATTCCGCGCAGCTGGTATTTGGCCCATAGATACAACTAAATTTGATGAACAGTTTGTAGATGCAGCAACATCATCACTGGAAAATCCCAGCATTTTACAAAGAGCAGTGACCCCTGATTCACAAATATTACCAACATCAATTGAGCAGCAAAGACCAGCCACACCTTTGGTTAACTTAAATGAATCCATTCCACTTACAAATATTGTTAATGTTCCCATAATGCCACAACAAAAGAGTAAACAAACTTCCAGAAAAAAACATTCTACTGTAATAACGAGCACTCCGATGAAAGATAGTCTTGAggaaaaagaacaaaaaaagaaatataaagagCAGATAAAAGAAACTGAAAAGACCGTAAatacaaataaaggaaaaaaaggaGTGAAAAATCTTAGAGCATTTGCAGATGAGAATTATGAAATTGAGAAGCAAAAGAGGAATGTACCACGCAAAAAGAAGAAAGTCGATAAAGGAGCTACGACGGAGAAAGAGTATTATTGTCTGATTTGTGCCGAAAAGTATGAAGATCCTCCAGGTGAAGACTGGATTGAATGTCACAAATGTAGGTTGTGGGCCCACGAAAACTGCACAAGTGGTGAAAGCACTTCAAAGGGTTTTCTCTGTGATTTTTGTAGGAGTTAG
- Protein Sequence
- MPRRYQRKTETKYKLEDLEKAVHDVRNKILSLGKASIIYSVPKSTIHDYLKKEIINEPKTGRKAIFTDAQETELEQHIIKCSKVFYGLTIEMVRKIAFKFAEVNQLKHNFDKTSQMAGKDWFYGFKKRHPEISLRKPESTSINRITAFNETEVKIFFNNLEAVQAKYHFDGNRIYNVDETGISNVQRNSRILAPKGQKQVGMATSGERGTTTTVVCAFSASGRYVPPFFIFKRKRMNAHLLRGGNADMIAAVSDSGWINEHLFVDWLHHFISFAKPTLEEPILLILDNHESHISLACYLLCRQSGIILLSLPPHTSHRMQPLDLTYFGPIKTAYNRECDLYMASNVGRKITQYEVVELFTKAFNRISNIEKAANGFRAAGIWPIDTTKFDEQFVDAATSSLENPSILQRAVTPDSQILPTSIEQQRPATPLVNLNESIPLTNIVNVPIMPQQKSKQTSRKKHSTVITSTPMKDSLEEKEQKKKYKEQIKETEKTVNTNKGKKGVKNLRAFADENYEIEKQKRNVPRKKKKVDKGATTEKEYYCLICAEKYEDPPGEDWIECHKCRLWAHENCTSGESTSKGFLCDFCRS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01360550; iTF_00044392; iTF_00044393; iTF_01221449; iTF_00044394; iTF_00041711; iTF_00041712; iTF_01020183; iTF_01020168; iTF_00357373; iTF_01303269; iTF_00186069;
- 90% Identity
- iTF_00044392;
- 80% Identity
- -