Mnit008353.2
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421420.1:5150607-5152213[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4e-11 1.5e-08 35.0 0.0 3 39 16 53 14 56 0.91
Sequence Information
- Coding Sequence
- ATGCCACGACGTTACCAAAGGAAGACTGAGACCAAATACAAATTAGAAGATTTAGAAAAAGCCGTTCACGATGTAAGGAACAAAATACTGTCGTTAGGAAAGGCatctattatttattctgtTCCAAAAAGTACTATACATGACTATCTcaagaaagaaataataaatgaacCTAAAACTGGAAGAAAAGCTATATTTACTGATGCACAAGAAACTGAATTAGAacaacatataattaaatgcaGCAAAGTATTTTATGGCTTAACAATAGAAATGGTGCGAAAAATAGCTTTTAAATTTGCAGAAGTGAATCAattgaaacataattttgaCAAAACATCTCAAATGGCAGGAAAAGACTGGTTTTATGGATTTAAAAAGAGACACCCTGAAATTTCGCTTCGTAAGCCTGAGTCTACTTCTATCAATAGAATAACAGCATTTAATGAAACggagataaaaatgttttttaacaatttagaaGCCGTGCAAGCAAAATATCACTTTGATAGTAATCGTATTTACAATGTGGACGAGACCGGTATTTCTAATGTCCAAAGGAATTCAAGAATTTTGGCGCCAAAAGGTCAAAAACAAGTCGGTATGGCAACAAGTGGTGAACGAGGCACGACAACAACAGTTGTTTGCGCATTCAGTGCTTCTAGTGGAATAATATTATTGTCTCTTCCACCTCATACATCCCATCGCATGCAACCACTAGACCTAACATATTTCGGACccattaagactgcttataatAGAGAATGCGACTTATACATGGCTTCAAATGTGGGCCGAAAAATTACACAGTATGAGGTCGTAGAACTTTTTACGAAGGCTTTTAACCGCATCAGCAATATAGAGAAAGCAGCAAACGGATTCCGCGCAGCTGGTATTTGGCCCATAGATACAACTAAATTTGATGAACAGTTTGTAGATGCAGCAACATCATCACTGGAAAATCCCAGCAATTTACAAAGAGCAGTGACCCCTGATTCACAAATATTACCAACATCAATTGAGCAGCAAAGACCAGCCACATCTTTGGTTAACTTAAATGAATCCATTCCACttacaaatattgttaatgttccCATAATGCCACAACAAAAGAGTAAACAAACTTCCAGAAAAAAACATTCTACTGTAATAACGAGCACTCCGATGAAAGACAGTCTTGaggaaaaagaacaaaaaaagaaatataaagagCAGATAAAAGAAACTGAAAAGACcgtaaatacaaataaaggaaaaaaaggAGTGAAAAATCTTAGAGCATTTGCAGATGAGAATTATGAAATTGAGAAGCAAAAGAGGAATGTACCACGCAAAAAGAAGAAAGTCGATAAAGGAGCTACGACGGAGAAAGAGTATTATTGTCTGATTTGTGCCGAAAAATATGAAGATCCTCCAGGTGAAGACTGGATTGAATGTCACAAATGTAGGTTGTGGGCCCACGAAAACTGCACAAGTGGTGAAAGCACTTCAAAGGGTTTTCTCTGTGATTTTTGTAGGAGTTAG
- Protein Sequence
- MPRRYQRKTETKYKLEDLEKAVHDVRNKILSLGKASIIYSVPKSTIHDYLKKEIINEPKTGRKAIFTDAQETELEQHIIKCSKVFYGLTIEMVRKIAFKFAEVNQLKHNFDKTSQMAGKDWFYGFKKRHPEISLRKPESTSINRITAFNETEIKMFFNNLEAVQAKYHFDSNRIYNVDETGISNVQRNSRILAPKGQKQVGMATSGERGTTTTVVCAFSASSGIILLSLPPHTSHRMQPLDLTYFGPIKTAYNRECDLYMASNVGRKITQYEVVELFTKAFNRISNIEKAANGFRAAGIWPIDTTKFDEQFVDAATSSLENPSNLQRAVTPDSQILPTSIEQQRPATSLVNLNESIPLTNIVNVPIMPQQKSKQTSRKKHSTVITSTPMKDSLEEKEQKKKYKEQIKETEKTVNTNKGKKGVKNLRAFADENYEIEKQKRNVPRKKKKVDKGATTEKEYYCLICAEKYEDPPGEDWIECHKCRLWAHENCTSGESTSKGFLCDFCRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01360549;
- 90% Identity
- -
- 80% Identity
- -