Arep000480.2
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- clz9
- Assembly
- GCA_949125135.1
- Location
- OX421221.1:6357458-6359227[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-11 2.3e-08 34.3 0.0 3 39 16 53 14 56 0.91
Sequence Information
- Coding Sequence
- ATGCCACGACATTACCATAGAAAGACTGAGACcaaatacaaattagaagatttaGAAAAAGCGGTTCACGATGTAAGGAACAAAATACTGTCGTTAGGAAAGGCAGCTATTACTTATTCggttccaaaaagtacaatacaTGACTATCTCAAGAAAGAAATTATAAATGAACCAAAAACTGGAAGAAAAGCTATATTTACTGATGCACAAGAAAAGGAATTAGAAGAACATGTCATTCAGTGCAGCAAAGTATTTTATGGTTTAACAATAGAGATGGTGCGAAAAATAGCATTTAGATTTGCAGAAGTGAATCAATTGAAgcataattttgataaaacttccCAAATGGCAGGAAAAGACTGGTTCTACGGATTTAAAAAGAGACACCCTGAAATTTCGCTTCGTAAGCCCGAGTCTACTTCTATCAATAGAATAACAGCTTTTAATGAAACGgaggtaaaaatgttttttaacaaTTTAGAAGCCGTGCAAGCAAAATATCACTTTGATGGTAATCATATTTACAATGTGGACGAGACTGCTATTTCTAATGTCCAAAGAAATTCAAGAATTTTGGCACCAAAAGGCCAAAAACAAGTCGGTATGGCAACAAGTGGTGAACGAGGCACGACAACTACAGTTGTTTGCGCGTTCAGTGCTTCTGGAAGGTATGTTCCCccgttttttattttcaaaagaaagCGAATGAATGCTCATCTGTTGCGAGGAGGCAATGCTGATATGATCGCAGCAGTTAGCGATTCTGGTTGGATTAATGAGAACCTATTTGTGGATTGGTTACATCATTTCATATCTTTTGCTAAACCAACTCTTGAAGAACCAATTTTGCTTATCCTAGACAACCATGAAAGCCATGTTAGTCTTGCTTGCTATCAGCTTTGTCGCCAGAATGGAATAATATTATTGTCTCTTCCACCTCATACATCACATCGTATGCAGCCACTAGACCTAACATATTTCGGACCCATCAAGACTGCTTATAACAAAGAATGCGACTTATACATGGCTTCAAATATAGGCCGAAAAATTACACAGTATGAGGTCGTAGAACTGTTTACGAAGGCTTTTAATCGCATCAGTAATATAGAGAAAGCAGCAAACGGATTCCGCGCAGCTGGTATTTGGCCAATAGATACAACTAAATTTGATGAACAATTCGTAGATGCAGTATCATTATCACTTGACAATTCCAGCAATTTGCAAAGAGCAGTGACCCCTGATTCGCAAATATTACCAACATCAAATGTGCAGCAAAGGCCAACCACCCCTTTGGTTATGTTGAATGAATCAATTCcactaaaaaatattgttaatgttCCCATACTGCCACAACAGAAGAGCAAACAAAGTTCTAGAAAAAAACATTCTATTGTTATAACCAGCACTCCAATGAAAGACACTCTCGaggaaaaagaacaaagaaagaaaTGTAAGGAGCAGataaaagaaattgaaaagaTCGCAAGTACAAATAAAGGGAAAAAAGGAGTGAAAAATCTTGGAGCATTTGCGgatgaaaattttgaaaaggaGAAGCATAAGAAGAATGTACCATCCAAAAAGAAGAAAGCCAATGAAGGAGCTAGGACGGATAAAGAGTATTATTGCCTAATTTGTGACGAGAAGTATGAAGATCCTCCAGATGAAGATTGGATTAAATGTCACAAATGTAATTTATGGGCCCACGAAAACTGCACAAGTGGTGAAAGCACATCAAAGGGTTTTCTCTGTGATTTTTGTAGGAGTTAG
- Protein Sequence
- MPRHYHRKTETKYKLEDLEKAVHDVRNKILSLGKAAITYSVPKSTIHDYLKKEIINEPKTGRKAIFTDAQEKELEEHVIQCSKVFYGLTIEMVRKIAFRFAEVNQLKHNFDKTSQMAGKDWFYGFKKRHPEISLRKPESTSINRITAFNETEVKMFFNNLEAVQAKYHFDGNHIYNVDETAISNVQRNSRILAPKGQKQVGMATSGERGTTTTVVCAFSASGRYVPPFFIFKRKRMNAHLLRGGNADMIAAVSDSGWINENLFVDWLHHFISFAKPTLEEPILLILDNHESHVSLACYQLCRQNGIILLSLPPHTSHRMQPLDLTYFGPIKTAYNKECDLYMASNIGRKITQYEVVELFTKAFNRISNIEKAANGFRAAGIWPIDTTKFDEQFVDAVSLSLDNSSNLQRAVTPDSQILPTSNVQQRPTTPLVMLNESIPLKNIVNVPILPQQKSKQSSRKKHSIVITSTPMKDTLEEKEQRKKCKEQIKEIEKIASTNKGKKGVKNLGAFADENFEKEKHKKNVPSKKKKANEGARTDKEYYCLICDEKYEDPPDEDWIKCHKCNLWAHENCTSGESTSKGFLCDFCRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01360549;
- 90% Identity
- iTF_00044393; iTF_00044394; iTF_00186069; iTF_01360549; iTF_01360550; iTF_01221449; iTF_00041711; iTF_00041712; iTF_01020183;
- 80% Identity
- iTF_00044393;