Ssim018314.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- -
- Assembly
- GCA_949699795.1
- Location
- OX453072.1:19425848-19442058[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.6e-11 2.8e-08 34.1 0.0 4 39 171 207 169 211 0.90 2 4 1.3e-10 5.7e-08 33.1 0.2 3 39 224 260 222 263 0.91 3 4 1.7e-14 7.2e-12 45.6 0.1 2 45 278 322 277 322 0.96 4 4 6.6e-18 2.8e-15 56.5 0.0 1 42 329 371 329 373 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGGAACGAACCAATGTTAGTGAAGTGCGAGCCGCCCTCAGACGACGAAGACACGCAGTACCATCCGGCATTTATATCTAATCAACAAATCACGACGGAGCTTCTACCAATAAAATTGGAGAGAGTTTGTTCTGATGATGAAAATGTTTCAACATCCACTGATCTGCTACATCATTTGCAGCAGTGCGTGGCgccggccgcgcccgccgcgacgccggtgcgcgcgcgcgcgccgccgcccgccgccgcgctcggCACGCTCGAGACACTCGAGCCCGTCACGCACGTTGGAGGCCTGGGCTCCACCCTTATCGACAGACACGCCACCATGCTGACGGTCAACGAATTGCCTGATTCGTCAGACTTCATCCCTCTTCTTGCTGTTAAGGATGAACCTTTGTCCGAAGGGGAACAACACCACCTTAGCGGAGACGATACCAGCGATTCGGGCGGCGCTGCTTCAGAGACCCCGACTCGAGGATCTCCCAAAACCTGGTCCCAGCGAGACATGGACAACGCGTTAGACGCGCTTAGAAATCACCACATGAGCCTTACTAagGCGTCTGCGCGTTATGGCATCCCATCAACGACGCTGTGGCAGCGCGCCCACCGGCTGGGCATCGACACGCCGAAGAAGGACGCGGGGGCGAAGTCCTGGAGTGACGCGGACCTGCGCGGGGCGCTGCACGCGCTGCGCGCCGGCGCTATCTCCGCTAACAAGGCTAGCAAGGCTTATGGTATTCCAAGCAGCACGCTGTACAAGATCGCGAGGCGCGAGGGCATCCGTCTGGCGGCGCCGTTCAACGCGGCCCCGACGGCGTGGCGCCGCGCCGACCTGGAGCGCGCGCTCGCCGCCATCCGCTGCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCGCAGTACGGCATCCCCACCGGTACGTTATACGGGCGGTGCAAGCGAGAGGGCATCGAGTTGTCTCGCTCTAATCCAACTCCTTGGTCCGAAGATGCGATGGGGGAAGCACTAGAAGCTGTAAGAGTGGGTCAAATGTCCATAAACCAGGCTGCGATACACTATAACCTGCCGTACTCTTCTCTCTACGGCCGCTTCAAGAGGTGCAAGTACCAAATACAGGGTGTTCCACCCCATCCCCCGCAAGAGGTGGCCAATGCTTCTGAAATGGAGCCCCAGGGCCAGCCAGACTACCCGCAACAAGTCCAACAGACGACGGAAGACCAAAACAGCTACTTCGATATACCTTTCAGCCACATGTTTCAAGAGTACGAGCAGGCGATGTATTATTCACAGTGCAATGGGATCACAACCAGTTGA
- Protein Sequence
- MPGNEPMLVKCEPPSDDEDTQYHPAFISNQQITTELLPIKLERVCSDDENVSTSTDLLHHLQQCVAPAAPAATPVRARAPPPAAALGTLETLEPVTHVGGLGSTLIDRHATMLTVNELPDSSDFIPLLAVKDEPLSEGEQHHLSGDDTSDSGGAASETPTRGSPKTWSQRDMDNALDALRNHHMSLTKASARYGIPSTTLWQRAHRLGIDTPKKDAGAKSWSDADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALAAIRCGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQIQGVPPHPPQEVANASEMEPQGQPDYPQQVQQTTEDQNSYFDIPFSHMFQEYEQAMYYSQCNGITTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00287978; iTF_01152949;
- 90% Identity
- iTF_00287978;
- 80% Identity
- -