Clyc000486.1
Basic Information
- Insect
- Cecropterus lyciades
- Gene Symbol
- -
- Assembly
- GCA_002930495.1
- Location
- MOOZ01000036.1:700317-710179[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.2e-11 2.6e-08 34.1 0.0 4 39 171 207 169 211 0.90 2 5 4.5e-11 5.2e-08 33.1 0.2 3 39 224 260 222 263 0.91 3 5 5.6e-15 6.6e-12 45.6 0.1 2 45 278 322 277 322 0.96 4 5 2.2e-18 2.6e-15 56.5 0.0 1 42 329 371 329 373 0.95 5 5 4 4.7e+03 -2.0 0.1 24 31 411 418 410 418 0.86
Sequence Information
- Coding Sequence
- ATGCCCGGGAACGAACCAATGTCGGTGAAGTGCGAGCCGCCCTCGGATGACGAAGATACGCAGTACCATCCAGCATTTATATCCAACCaaCAAATCGCGTCGGAGCTTCTAACAATAAAATTGGAGACAGTTTGTTCTGACGATGAAAATGTGTCGACACCCACAGATCTCCTACATCATTTgcagCAGTGCGTGGCGCCGGCCGCGCCCGCCGCGACGCCGGTacacgcgcgcgcgccgccgcccgccgccgcgctcgGCACGCTCGAGACGCTGGAGCCCGCTTCGCACGCTGGAGGCCTGGGCTCCACCCTTATCGACAGACACGCCACAATGCTGACGGTCAACGAATTGCCCGATTCATCGGATTTCATCCCTCTGCTAGCTGTTAAAGATGAACCTTTGTCTGAAGGGGAACAACACCACCTTAGCGGGGATGATACGAGTGATTCGGGCGGTGCTACTTCCGAGACCCCAACGCGAGGGTCCCCTAAAACCTGGTCGCAGCGAGACATGGATAATGCGTTAGATGCGCTCAGAAATCACCACATGAGTCTTACCAagGCGTCCGCGCGTTACGGCATCCCGTCAACGACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCGAAGAAGGACGCGGGGGCGAAGTCCTGGAGCGACGCCGACCTGCGCGGCGCGCTGCACGCGCTGCGAGCTGGCGCCATCTCCGCTAACAAGGCTAGCAAGGCTTACGGTATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGTCTGGCGGCGCCGTTCAACGCGGCGCCGACGGCGTGGCGCCGCGCCGACCTGGAGCGCGCGCTCGCCGCCATCCGCTGCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCACAGTACGGGATCCCCACCGGCACATTATACGGGCGGTGCAAGCGAGAGGGCATCGAGTTGTCTCGCTCTAACCCCACACCCTGGTCCGAAGATGCGATGGGAGAAGCACTTGAAGCTGTAAGGGTGGGTCAGATGTCCATAAACCAGGCGGCGATACACTATAACCTGCCGTATTCCTCCCTCTACGGCCGTTTCAAGAGGTGCAAATATCAGATACAGGGTGTTCCTCCTCATCCCCCACAAGAGCTACCCAATGCTTCAGAAATGGAGCCCCAAGGCCAGTCTTCAGATTACCAGCAACAAGTCCAACAGACGGGGGAAGACCAAGGCTCCTACTTCGACATACCCTTCAGCCACATGTTCCAAGAGTACGAACAGGCGATGTATTATTCTCAGTGCAACGGGATCACGACCAGTTGA
- Protein Sequence
- MPGNEPMSVKCEPPSDDEDTQYHPAFISNQQIASELLTIKLETVCSDDENVSTPTDLLHHLQQCVAPAAPAATPVHARAPPPAAALGTLETLEPASHAGGLGSTLIDRHATMLTVNELPDSSDFIPLLAVKDEPLSEGEQHHLSGDDTSDSGGATSETPTRGSPKTWSQRDMDNALDALRNHHMSLTKASARYGIPSTTLWQRAHRLGIDTPKKDAGAKSWSDADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALAAIRCGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQIQGVPPHPPQELPNASEMEPQGQSSDYQQQVQQTGEDQGSYFDIPFSHMFQEYEQAMYYSQCNGITTS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01359636;
- 90% Identity
- iTF_01359636;
- 80% Identity
- -