Pahi002963.1
Basic Information
- Insect
- Parelbella ahira
- Gene Symbol
- -
- Assembly
- GCA_018244795.1
- Location
- DWME01001546.1:4630-14566[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.5e-11 6.8e-08 32.7 0.0 4 39 174 210 172 214 0.90 2 4 3.8e-12 4.7e-09 36.5 0.3 3 39 227 263 225 266 0.92 3 4 6.3e-15 7.7e-12 45.4 0.0 2 45 281 325 280 325 0.96 4 4 8.3e-18 1e-14 54.6 0.0 1 39 332 371 332 374 0.91
Sequence Information
- Coding Sequence
- ATGCCCGGGAACGAGCTAAAGCCGGTGAAGTGCGAGCCGTTGTCGGATGACGAGGAGGTGCAGTACCAACCAGTATATATAACCGATCAGCAAATCACACCGGAACTTCTACCTATAAAATTGGAAAGGGACTGTTCGAACGATGAAAATGTGTCAACGGACCTTTTACATCACTtacagCAATGCGCCGGGGGGTTGGAGGAGCCTCTGGCGCCGGCCGCGCCCGCAGCCACCCCAGTGCACGTGCGCctgcccgcgccgcccgcagcGTCGCTGGAAACTCTTGAGCCCGCCACACACGCCTCCGCCCTGGGCTCCACTCTTATTGACAGGCATACAACGATGCTGACTGCCAACGAAATACCGGACTCTTCAGATTTCATACCTTTTCTAGCGGTTAAGGATGAGCCATTGTCTGAAGGAGAACAACCACATCTGAGTGGAGATGACACCAGCGATTCAGGGGGCGCATCATCCGAGACGCCGACCCGGGGAACTCCGAAAACATGGTCACAACGAGATATGGATAATGCTTTAGATGCCCTCCGAAATCATCACATGAGTTTAACAAAGGCGTCAGCTACGTACGGTATCCCTTCGACAACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCGAAGAAGGAGGGCGCGGCCAAGTCGTGGCGCGACGCCGACCTGCGCGCCGCGCTGCACGCGCTGCGCGCTGGGGCCATCTCCGCGAACAAAGCCAGCAAGGCCTACGGCATCCCGAGCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATTCGGCTGGCGGCGCCGTTCAACGCGGCGCCGACGGCGTGGCGCCGCGCCGACCTGcagcgcgcgctcgccgccatCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCCGCCACGCAGTTCGGCATCCCCACCGGCACGCTGTACGGGCGGTGCAAGCGAGAGGGCATCGAGCTGTCCCGTTCCAACCCCACGCCATGGTCGGAGGACGCGATGGGGGAAGCGCTTGAAGCTGTCCGGGTAGGCCAGATGTCCATAAACCAGGCGGCGATCCACTACAACCTGCCGTATTCCTCACTTTATGGCCGCTTCAAACGTTCAAATCAGATACGGGGCGTACCACCTCATCCCCAGCCAGAGCTCCCGATTGTAGATGCGGAGCAAGGACAGCTTCAAGAGTACTACCAACTTCAACAACCACAAGCTGCTCAGGAGGACCTTATTCATCGTCCTTACAATGAAATCCCCTTTAGCCACATATTCGATTACGAGCAAGCAATGTATTACTCCCAGTGCAGCGGCATCACCACCAGTTGA
- Protein Sequence
- MPGNELKPVKCEPLSDDEEVQYQPVYITDQQITPELLPIKLERDCSNDENVSTDLLHHLQQCAGGLEEPLAPAAPAATPVHVRLPAPPAASLETLEPATHASALGSTLIDRHTTMLTANEIPDSSDFIPFLAVKDEPLSEGEQPHLSGDDTSDSGGASSETPTRGTPKTWSQRDMDNALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWRDADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQRALAAIRCGASSVQRAATQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRSNQIRGVPPHPQPELPIVDAEQGQLQEYYQLQQPQAAQEDLIHRPYNEIPFSHIFDYEQAMYYSQCSGITTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01359636;
- 90% Identity
- -
- 80% Identity
- -