Spin014135.1
Basic Information
- Insect
- Sphinx pinastri
- Gene Symbol
- MBD-R2
- Assembly
- GCA_947568825.1
- Location
- OX387615.1:16059634-16077152[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2 7e+03 -2.6 0.0 31 48 328 345 320 348 0.85 2 2 8.6e-16 2.7e-12 46.7 0.0 5 66 662 722 658 738 0.92
Sequence Information
- Coding Sequence
- ATGGAAACCACAGACATCTTATTAGAAAATAATGGTCCTGAACCACCAGAGATAGAAGCTGCATTGAACACCTCAGATACCAGCAAGGAGTCTGAAGAAAATTTAGATGCAATAAGAAAATTTATTGAAGATCAAGACAGAGAATTGCAAGAGAAAAATAATAAAGCAAATGTTGCGGAGTCAGTTGAACCTGAAATTTTGAGTAACAATGATGCAAATACAGAAAATAATAAAGGCACTTGTAATGATGTTGTAAATAATAAGAATGAAGGAACTACAACAGAGGTTGCTTCCAGTGTTTTGGATATGATACTAAGTGAATCAGAAGTAAAAATACAGGATAAAAAGGATTTTGCACCCGTGCCCAAGTATAACAGTTTGAGTCCAGCTGATAAAGTTGCTGGTGGCAGTATTTCTCTATCGATTGGCTCAAGAATAGAAGCCAAAGATTTCAGTGATGATTGGCATCCAGCGCAGATTGTGGAGGTTGATTATGACGAGATGGAGGTGTTGGTTCGTTATGAGCCGCACAACAAGAGTATTGCTCGTCACGACGAATGGATTAGCGTAAGCAGCCCTCGTTTAAGACCAACAAATACTAGTACCAACTCTAAATGTGACACAACTGAAGACAAGCTGCCTGAGCAGGTCGTCCAAGTAAAGGAAGAGATTAAAGAAGTAAAGGTGGAAGAAAAAGCGAAGATAACGTTCGCGGTGGGAGAGAGATGTCTGGCGCGATGGAGGGATAATAGGAGATTCGTCGCCACCGTACATAATGATTTGGGAAATGGTACCTATGAAATAATATTTGACGACGGTTTTTACTGGAAATGCAACGTATCAAGACTTTACAAATGGAAGCAAACTGGAAAGAATGATCTTTTGACCGTAGACACATCATTACATTCTGCCACGGGGGCTCCATCGCCCATACAAATCGGAGGTCCAAGCACGGCAGCTACACCAGCCAACCCAACTGGTTTCCACACACATCTTTTTGACCCAACGCGAGACTACCTCAGCTCCAAAAGTGAACGACGCGAAATGAAAAGAAAATTGAACATAAAAGAGATATTTAATATTGGTCAAAAGAAACAAAAAGCCAAATCGGATAAAGTTGTGAAAAAGCCGAGGATAATCAGAAGGCCTCCTAAAGTTAAAAGTGACCCTATTAAAAAAGAACTGAAGGTTGAACTTACAAGGGAGATACCAGATGCTGTTGCTTCTATCATTGGCTCAATGAAAAAAGACGAAATAGAAGAAATAAAAACCGAAGACATTATTGAAGTAAAACTTGAAGAAATAGACAAGGATGATTTAGAAGTCACAGATGCTACAGAATCCGAAAATGATGTACAGGTAGCGGATGATTTTACAGTGGATCCATTTAAAGCAGAATTAGACCCTGTACACGAAGAAGACGTAAAACTTGAAAAATTTGACAAACAAGATGGCAAGCACGAGGAAGTAATCGATAGGATGAAAGAGGTCATCAACAAACTGGAAGGTGGTCTGAAGGAGGACACGTTAAATTCTCCCAAAGTAGATATTAAGGAAGAAACTCCAATATCTACGAAACTTGAAAACATAGACGCAAAAACCGAAGAACCAAGCGAAAACGTAGTCGATGACGGCGTCACAGAGGCTAGCACTGCAAAAAAAGTGAAATCTAAAAAGCTTTCCAAGATTAAAAAAAGTAAGAAACTTAGAATGTTGCAGGAGAAGAAGGTAAAGAAACAAGTGCAAAAAGTCAAGAGTGAACTTGAAGAGATGAAAAAGCAAGTGGAAGAAATGAGAAAGCAGATGTTGTTGAAGACGCAGGAGTTTGCGAAGGTGCAGTCGGAGATGCCGGAGAGTTTCCTGTTACCCGGAGAGTGGTGTTGTCGGTGGCTGAACGGACAGCCAGTGGGGACGGTTAGCGAGATCGTGTGCGAGACTAAAGTTGATGGAGACGGGAAGCCGGGATTGCCGCGGCGAAGTGTTCAGGTGGAAGACAAGCGGTTACCACTAGGATGGACAAAACACATGGTACGCAGAAGCTTGGGACATTCTGCCGGCAAGTGGGACGTCGTACTTGTTAGCCCGGAAAATCGTCGGTTCCACACAAAGACAGACATGCGTAATTACCTCGAGAACAATCCAGACGAGTCCCTGAAGCCGTATGAAGCTGCGCTGATGGACTTTGGGGTGCACTTGAAGTTGGCTCGACGTATGGGATGGATCACCAACACTCCAGGGGGAGTGGCCGACGGGCCCACACTACCCTGCGGGACCTTGCATAGCACCTCACCCTTGGTTAAGAGGAAGAAGCTGAACCTTAAGAAGTCGGAGAAGAAAAGCCGGCGGCAGAAGAAAAATAAACTGAATTTCAGGATGAAGTTGGCTTTGGCATCTCAGAATGTCGTTGACGACACTTGTATGGAAACCACTTCTGACTCTGTGGCGACCCCGGAACCCGTGCTTGATACTATGACCTTAGAAGATGGCTATGTGTATGTTGGCTCCCTCAAAGTTCAAATAATAGAGAATCTCCTCCGATGTCCTGCTGAAGGATGCTTCAAGAATTTCAGAAACAACACATTGTTGCAAATGCACATTAAGCATTATCATCGAGAATTAAGAGAAAAGCTGGGTGACACCCCGAAAGTTCTCGACTTAGCATATGCCAGAACTATGCCACTAGACACTGAGCCGGTAAAGCAAGTGGAGAGCAAGGTTCTAAAGGTCAAGATCTCCAAACCGAAGCGTGAGGAACCTAAACTGGAAGCTACTGAAGATAAACCCGATTTACTCATTGATATAGCACCCAAAACTCCAGTTAGTCAAGACGGTGAAAGTACACCAAAAGCCCAGGATTCACCTAAGTTGCGTGATGCGTTGGTCAACAAGCCGGTGAAAAGACCTAAAGTATTGCTTCCAGTCAGAAGACCAGAGCTTGAACCGGAGCCAACGAATGTGGACGATAATGAAGAGCTACCAGAAATGGTGGTCGATAACTATAGTATGATAGAGCCGTTAGATTTTGAGACGGCGATCTCTACGCATACTGTGACTAAACCTGTGAGTGAAAAACGGAAGAAGGATAAGAACTGCAAATCTCTGACGGTGATGTCGCAAAAGGCAAGCGAGGATGAGGAATGGTTATCGAACTGTGACTTCGAGACGCAGTCCAGTTTCCCGAGGTCTGGCACGCCCGACTCTAAATCGATGGAGTTGCAATTAATTAAGGCGCGGGGTTTAACGCCGGAATCTGCTGACGAGCACAACGACGTTCAGAAATACACGTACACGGAAAACGGCGAGCGCGTGAAGATAGTGCACATGAAGCGCGAGGAGATCATCAACTGCCACTGCGGGTTCCGCGAGGAGGACGGGCTCATGGTGCAGTGCGAGCTGTGTCTGTGCTGGCAGCACGCGCTCTGCCACAACATACAGAGCGAGGCGCAGGTGCCGGAGAAGTACACGTGCAGCATCTGCCTGAACCCCCGGCGCGGGAGGCGGTCGCAGCGGTTCCTGCACGACCAGGACCGGCTGTACGAGGGGCTGCTGCCGGGCGCGCGGCCCTGCGACCTGCTGCGTCGCTCGCATGAGCTCTCCGGCAACCTGCTGCGGATACAAGACGCGCTGCACGCGCTCAGGGTCAAGTGCTTTGTCGCATCCAAAAAAGATCACCCGAAACTATACCTATGGGCAAAAGACTGGGAGCACGCTGAGATATCGTACACTCAAGAGAAGCTCAACTCTGATTACTCGGACTTGAACATTATGATCAACACGGTCGGCAAGGAGAACATGCCGATCAAACCTGAGGATATGAAGGACATGCAGCTCGGACTACCCTCGGACGACGCGGACCTTGATAGGTTCTCGCAGCGAGATAATCAACTGAGCCCGCACGTGTTGCTGACCAACTTGCTGTCGAGTCCTGGCGGTGCGTCACTTGAGCTGCCCATAAGTACATCCGAGTTGGAGACGCTCGCCAAATCCGTACAAGAGCAAGAGTGTGCAGTGGCGGTGGCGGCGGCGGCAGTGGGTCCGCAGCCCGAGGCGGCCATCGAGAACGGCGCGTGTCGCGTGCGCCTGCTGCGCCACCTGCAGCGCTGCCACGCGCTCGTCGACGCGCGGCTCGACTCCATCGAGGCGCAGGTGGCGGAGCTGGAATCTCAAGACCCGTCGTTCGAAGACGACGAGACGCCCGACTTCTTCCCGCGAACAAAACAGACTGTTCAGATGCTGCTGCGGGATCTGGACACTATGGAAGAGTTGGGAATCATCACTTAA
- Protein Sequence
- METTDILLENNGPEPPEIEAALNTSDTSKESEENLDAIRKFIEDQDRELQEKNNKANVAESVEPEILSNNDANTENNKGTCNDVVNNKNEGTTTEVASSVLDMILSESEVKIQDKKDFAPVPKYNSLSPADKVAGGSISLSIGSRIEAKDFSDDWHPAQIVEVDYDEMEVLVRYEPHNKSIARHDEWISVSSPRLRPTNTSTNSKCDTTEDKLPEQVVQVKEEIKEVKVEEKAKITFAVGERCLARWRDNRRFVATVHNDLGNGTYEIIFDDGFYWKCNVSRLYKWKQTGKNDLLTVDTSLHSATGAPSPIQIGGPSTAATPANPTGFHTHLFDPTRDYLSSKSERREMKRKLNIKEIFNIGQKKQKAKSDKVVKKPRIIRRPPKVKSDPIKKELKVELTREIPDAVASIIGSMKKDEIEEIKTEDIIEVKLEEIDKDDLEVTDATESENDVQVADDFTVDPFKAELDPVHEEDVKLEKFDKQDGKHEEVIDRMKEVINKLEGGLKEDTLNSPKVDIKEETPISTKLENIDAKTEEPSENVVDDGVTEASTAKKVKSKKLSKIKKSKKLRMLQEKKVKKQVQKVKSELEEMKKQVEEMRKQMLLKTQEFAKVQSEMPESFLLPGEWCCRWLNGQPVGTVSEIVCETKVDGDGKPGLPRRSVQVEDKRLPLGWTKHMVRRSLGHSAGKWDVVLVSPENRRFHTKTDMRNYLENNPDESLKPYEAALMDFGVHLKLARRMGWITNTPGGVADGPTLPCGTLHSTSPLVKRKKLNLKKSEKKSRRQKKNKLNFRMKLALASQNVVDDTCMETTSDSVATPEPVLDTMTLEDGYVYVGSLKVQIIENLLRCPAEGCFKNFRNNTLLQMHIKHYHRELREKLGDTPKVLDLAYARTMPLDTEPVKQVESKVLKVKISKPKREEPKLEATEDKPDLLIDIAPKTPVSQDGESTPKAQDSPKLRDALVNKPVKRPKVLLPVRRPELEPEPTNVDDNEELPEMVVDNYSMIEPLDFETAISTHTVTKPVSEKRKKDKNCKSLTVMSQKASEDEEWLSNCDFETQSSFPRSGTPDSKSMELQLIKARGLTPESADEHNDVQKYTYTENGERVKIVHMKREEIINCHCGFREEDGLMVQCELCLCWQHALCHNIQSEAQVPEKYTCSICLNPRRGRRSQRFLHDQDRLYEGLLPGARPCDLLRRSHELSGNLLRIQDALHALRVKCFVASKKDHPKLYLWAKDWEHAEISYTQEKLNSDYSDLNIMINTVGKENMPIKPEDMKDMQLGLPSDDADLDRFSQRDNQLSPHVLLTNLLSSPGGASLELPISTSELETLAKSVQEQECAVAVAAAAVGPQPEAAIENGACRVRLLRHLQRCHALVDARLDSIEAQVAELESQDPSFEDDETPDFFPRTKQTVQMLLRDLDTMEELGIIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00859557;
- 90% Identity
- iTF_00859557; iTF_00859490;
- 80% Identity
- -