Smar036960.1
Basic Information
- Insect
- Sphenella marginata
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_951509765.1
- Location
- OX608081.1:66787810-66793544[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-115 2.2e-110 370.2 29.5 1 299 293 587 293 588 0.92 2 2 0.12 6.4e+03 -2.3 4.1 220 244 616 640 592 661 0.47
Sequence Information
- Coding Sequence
- atgtcagatAACATAAATAACAATGTCCTGACAAGTGTTGGTGACAACGCTGAAATAAACGATAATTGCGTGGCTTCAGACTCTTCTAATATGGAGAAactaaataatcaaaacaagtCTACAAGTATTTGTAGTAATGATGAAATCATCGAAGACGGATTCGTTTATAGCGAAACTGACTTGTTAGATGAGTTAAATGACGGTGAGGGGAACGATGCCGACAACAACGACGCCGGCGAAGTAGACGAAGTCAACGGCAACAACGAAAGATATGTGAACGCTGAAAAAGTTAACAATCATCATCCCATTCCCATCATATCCAACAAGGGGAACAAGATTGCAGACGTTGTACAcgacacaacaacaaatattattcACACAAATTCTAATAGCGAAAccacagaaaatagcacaaacataaataaaaacaacaacgacaatTTATTAAACGTGGCTGCAAGTGTCATACACAACAATTGTGTGCCAATTGTGAGCACTGATAATGCGACTACTACTCAACTAAATGATAAGCACACAAGTACAACGCCTCTGCCAAAATTGGAACTGCACGACGTACCAAATGACGAATCATGCACGATCCGAACAGAATGCAGCGGAATTGATTCATATTGTCCCATAACGCCACGCCGTATTTTTGATGTGGAATCTGAATCTAATctattgttaaattttaatgcaacaaacaacaacaaaaatgataaTAATGCAGACCAAATGAAAGACACAAAGTCTGCTACTACAGATGCTGTCGTTGTTAGCGGTAATAAAGATCATGGTGATGATGAAGGTTATTATTATGCTGACGAGCCTGAAGATGAATTAATTGTACAGTTCCTGGGAGAAGCCAATCGTATtGCCGAGGCGCGTTTGGCTGCTCGACGTCAAGCGCGTGCTGAGGCACGCGAAATTCGAATGCGGGAATTGGAACGTCAACAAAAAGAGCAAGAACAAAATGCAGATCGCGTGTTCGACATGCACACTGTATCCGGCATCGATCCGTTATCACGATCGAGGCTGGTAACCGGCGTCGGAAGCTCACCTCTAGGTGCGGTGCTCAATAGTACAAGAGCCAACTCGATGTCATCACGTCGCAGTAGTGAAGATTCATTAGAAGAAGAAGGACGTAGCCTGCGGGATATACGACATGAGCTTAAGGATGTTGAAGAAAGGTTCAGAAAGGCAATGATAGCCAATGCGCAGTTGGATAATGAACGTGCCTCACAAACGTATCAAATACAACTCCTAAAGGATAAGCTTGAGGAAGTCGAAGAATCATATGCGCAACTTCAGcgtgaatttaaagaaaaatcacGTGATTGCAACgcattaaaaagaaatttggaTAAAATAAATGAGGAACTCAAATTGGTGCAAGGTCAACTAACTGAACGAGATAAATTAATTACGGAACAGGGTTTAGTAATTGTGGCCATAGAAAATGATGAGGGTACCGATGCAAAACGTGCTCTAGTCAGCGTGGAGAACGCTCAGCTATTAGGTTCAGTTCAAGGTTCATTAGatgtgCGACTGAAAAGGTTTAGTGAGGAAAAACATCAGCTTTTATCAGAAGTTCAAAAACTGCAAGAAGCATTAGAGAGTTACAAAAGTCAAGGCAAAGGGCGATCAAATTCGCTGAATGGACCATCCGGGTCGGATGAAGATTATGAAGCACAGAGAGAAGCGAATAAAATAATATCCGATTACAAGTATAAATTGCAAAAGGCTGAACAAGAAATTGCTAGTTTACAAGCCAGTTTAGCACGTTCTGAAACGCAAGTTATACGTTATAAAAGCACAGCTGAAGCTGCTGAAAAGGCAGAAGCTGAACTGAAAATCGAACGAAGAAAGCTGCAAAGAGAGAACCGTGAAGCCATGGAACGTTTGGAGGAATTGGAAACATCAAATAATCACCTGCTAAAGCGATTGGACAAATTAAAGAATGCTAAAAGCGCGTTACTGAAAGATCTTTGA
- Protein Sequence
- MSDNINNNVLTSVGDNAEINDNCVASDSSNMEKLNNQNKSTSICSNDEIIEDGFVYSETDLLDELNDGEGNDADNNDAGEVDEVNGNNERYVNAEKVNNHHPIPIISNKGNKIADVVHDTTTNIIHTNSNSETTENSTNINKNNNDNLLNVAASVIHNNCVPIVSTDNATTTQLNDKHTSTTPLPKLELHDVPNDESCTIRTECSGIDSYCPITPRRIFDVESESNLLLNFNATNNNKNDNNADQMKDTKSATTDAVVVSGNKDHGDDEGYYYADEPEDELIVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHTVSGIDPLSRSRLVTGVGSSPLGAVLNSTRANSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQTYQIQLLKDKLEEVEESYAQLQREFKEKSRDCNALKRNLDKINEELKLVQGQLTERDKLITEQGLVIVAIENDEGTDAKRALVSVENAQLLGSVQGSLDVRLKRFSEEKHQLLSEVQKLQEALESYKSQGKGRSNSLNGPSGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00992593;
- 90% Identity
- iTF_00992593;
- 80% Identity
- -