Smar031399.1
Basic Information
- Insect
- Sphenella marginata
- Gene Symbol
- sip1
- Assembly
- GCA_951509765.1
- Location
- OX608080.1:93125651-93128464[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-93 1.1e-88 299.0 17.2 1 275 416 685 416 685 0.98 2 2 0.22 5.7e+03 -1.9 0.0 243 269 698 724 690 730 0.76
Sequence Information
- Coding Sequence
- ATGTCGGACAATGAATATGAGCGATTTGAAATAACCGATTATGATTTGGATAACGAGTTCAATCCAGGACGACGACGATATCAAACAAAGAATCAGTTAATTTATGGCATTTGGGCCGATGATAGTGATAATGACAGTGGCGAAGAAACTAGTAATAGGCGTGGGCGCCGCGGTGTTGGTCGCCGCCCGAAAGATTACTCAGCGCCCGTTAGCTTTGTTGCCGGTGGCATACAGCAAGCAgggaaaaagaataaaaagaaagatgCAGATGGCGAAGAAAATGAAATATCAGATGAGGAAAGTGATGCCGACGATGATGCAGATGAACGCCCATCGTTTGGACGTAAACAAGTTGAAGGTGCAGATGGAGGCGAAGAGAGTGGTTCGGAATCTAGCTCTGATGATGAACGTACAAGAGAAAAACGAGTTGAAGCCAGTCGGCAACAGCGTGATAGCGCTGGACGACATACAAGTAATCCAAATGTGGGAGCATGGGAACAACATACACGTGGTATTGGTGCGAAATTGCTGTTGCAGATGGGTTATAAACCAGGCAAAGGCTTAGGTAAAGAGCTGCAAGGCATTTCGCAACCAGTGCAGGCACATGTACGTAAAGGACGTGGTGCTATTGGAGCTTACGGACCGGAGGCGGCTGCTAGTGTGGGTGGGAAGGGGcCGGTGGTGAAGGAAGACGAAGATGTGCGCGAAGCCAAGGAATTCAAAGAGAAGCTGAACAAATGGAAAAAGACAGAGGGACGCCAAGAAAAGGGCAAGCGTTACTATTATCGTTCTGTCGAGGAAGTCATTGAAAAGGGGAAAAAAGGAAACTTCATGTTTTCTGACAAAATTGGAAAAAAGATCGGCAATGTGCCTGTTATTGACATGACGGGCCCAGAAAAACGTGTCCTCAGCGGTTATCACGCCTTAGGACAGACCAAAGTACCCGACGAAGAACTATATGATTTGGAGCAAGCTGTGGCAAGTAGCAGTATCAACGCCAAAAAGGGCGCCACCTTTGCGCTCCCCGAACTCACACATAACTTGCAACTAATTGTAAATTTATGCGAACAAGATATCATCACACTCGATAAAGCTGAACGCGAGGCAACTGATCGTCAAGCAGCTCTGGAGCATGAACGCAAAAATCTTAATGAGATTGTTCAACTGGAAAAGAATCATATCGATACATTAGAACAAGCCCTCATACTCGTAGAAGAGCTCACACAAAGTAATGAAGTGTTAACGCTCCAACGTGCCGAGCAAATTTTCGTTACACTACAACAAAACTATGCTGCCGAATATCAAGAGTTTGCGCTAGGTGATTTAGCAGCAGGTGTAATTGCGCCACTTGTAAAGATATCGCTCGAAACGTGGAAACCACTTGAACAGCCGACACAACACGtggaaatcataaaaaaatggcGTGGCATACTCGAGACAAATACGGAACCACAAAATGAATCACGCAACATTTTCGATCCGTACTCATCACTCGTATGGGCTGGTGTTATACCAAGTTTTCGCGCATGCGCTGCCTCATGGAATCCAAAACAACATCAACCTATGGCTGCATTGCTCGATTGTTGGGCGCCACTGTTTCCCACATGGATACTCGATTCTGTGCTCGAACAACTGGTGTTGCCGCAGTTAAATAATGGCGTGCGTGATTGGGATCCCCTAACTGATACAGTGCCCATACACATGTGGATACTTCCATGGAATAACATACTTGGTCATAAAATGGAGGAGTTCATCTTTCCAACGATACGCGAGAAGTTAGCAGCCGCCTTGCAAGCTTGGATGCCACAAGATCGTTCTGCGCGTGCCATGCTCACCCCCTGGAAGGGCGCATTCGATGACATCGAAATGCAACGTTTCCTCTCTCAACATATTATACCCAAATTACAAATGGTATTAaatgaatttattataaatccaTTGCAACAACAGCTGGAATTGTGGAATCAAGTGTGGGAGTGGCATGAACTTCTCACCACACACCAAATGTCTCTTCTGCTCGATAAGTATTTCTTTCCCAAATGGATGCAAGTTCTTGTGCTGTGGCTTAATCAATCTCCAGATTATGCAGAAATCTCACGTTGGTATACTGGTTGGAAGAGTATGTTTACTGAAGAGATTTTACGCGAGCCGCTGGTAAAAGAGCATCTTCGTCGCGCTCTTGAAATAATGCATCGTGCTACAGATGTGCAATCGCAGCAAGGTCTTGCTACAACTACGATACCTAATGCACCGAATATGAattcaacacaacaacaacaaccaccactACCACCGCCGGTGCCGGCCCCTGCATTAATGGATCTACAAATCCCAGCTCCGGCTCAACTGGAATTCAAAGAGTTGGTTTCACAAAAGTGTGCCGAACGTGGTATTCTATTTGCTCCAATGCCGGGCAGAAGAGAGCTGGGTAAACAGGTTTATCGTGTTGGCAAACTTTACTGTTACATCGATCGTAATGTTTGTATGCTAAGCGATAGTACTATGAAGAACTGGATGCCAACTTCGGTGCAACAGCTAATGGACCGTGCAGTTTAA
- Protein Sequence
- MSDNEYERFEITDYDLDNEFNPGRRRYQTKNQLIYGIWADDSDNDSGEETSNRRGRRGVGRRPKDYSAPVSFVAGGIQQAGKKNKKKDADGEENEISDEESDADDDADERPSFGRKQVEGADGGEESGSESSSDDERTREKRVEASRQQRDSAGRHTSNPNVGAWEQHTRGIGAKLLLQMGYKPGKGLGKELQGISQPVQAHVRKGRGAIGAYGPEAAASVGGKGPVVKEDEDVREAKEFKEKLNKWKKTEGRQEKGKRYYYRSVEEVIEKGKKGNFMFSDKIGKKIGNVPVIDMTGPEKRVLSGYHALGQTKVPDEELYDLEQAVASSSINAKKGATFALPELTHNLQLIVNLCEQDIITLDKAEREATDRQAALEHERKNLNEIVQLEKNHIDTLEQALILVEELTQSNEVLTLQRAEQIFVTLQQNYAAEYQEFALGDLAAGVIAPLVKISLETWKPLEQPTQHVEIIKKWRGILETNTEPQNESRNIFDPYSSLVWAGVIPSFRACAASWNPKQHQPMAALLDCWAPLFPTWILDSVLEQLVLPQLNNGVRDWDPLTDTVPIHMWILPWNNILGHKMEEFIFPTIREKLAAALQAWMPQDRSARAMLTPWKGAFDDIEMQRFLSQHIIPKLQMVLNEFIINPLQQQLELWNQVWEWHELLTTHQMSLLLDKYFFPKWMQVLVLWLNQSPDYAEISRWYTGWKSMFTEEILREPLVKEHLRRALEIMHRATDVQSQQGLATTTIPNAPNMNSTQQQQPPLPPPVPAPALMDLQIPAPAQLEFKELVSQKCAERGILFAPMPGRRELGKQVYRVGKLYCYIDRNVCMLSDSTMKNWMPTSVQQLMDRAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00081221;
- 90% Identity
- iTF_00992591;
- 80% Identity
- -