Stae031042.1
Basic Information
- Insect
- Sphaerophoria taeniata
- Gene Symbol
- -
- Assembly
- GCA_943591125.1
- Location
- CALSBT010000275.1:337478-367125[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-10 1.3e-07 32.4 0.0 1 38 380 418 380 423 0.89 2 4 5.7e-13 4.1e-10 40.4 0.1 2 39 435 472 434 475 0.94 3 4 1.7e-17 1.2e-14 54.9 0.0 1 45 489 534 489 534 0.98 4 4 4e-19 2.9e-16 60.1 0.0 1 44 541 585 541 586 0.96
Sequence Information
- Coding Sequence
- ATGGCGTATGCCGTAACAATTCACAAGAGCAAAGGTGGTCTTCTCCGAACTGCGGAACAATTGAAAATCAAAGGGCTTTGCGAAACAGCCGAAAGTGTCGATGAGGCAGAGGCAGCAACAGCTACCATCACATTGTCAGAAAATAATATTACACAAACTGTTGTCGGCAATATTGTGAATTCATCACAGGTTTCGGGTGGACAGACAATAACGACGACAGCTGTCAGCCAACACAGTGCGGAAGATTCGAATTCGGATAAGCCGAGTGCTACGAAAATCTGCAAAACCGAACAGGCCAGCTCGCCGAATTCGAATAATGGCAGTGTAACTGTCCCACCAGGAACAGCAATTGTAACTCAGATCGTTGTTGCCCGTGACGTAAAGGATAATAAAAACATGACCAGTATAGGAATGGGAATGAACGGCGGTCTCCTCGGAGTACCAATGGGCTTCTTAGATTTCGCACCCGAACCACCAGCACCATCAGCGACACCAGTTACAGTGACGGAGCACGTCGATTTGTCGTGTAACCCAAGCCAGGACACCCGAGATTTATCAAATCCCACCGAAGCGCTCGATATTGACAATCACTTAGCACAACATATGATCCAACGGCTCGATCAATCACCGATGCATACAATCCACCATCAGTCGTCAACTGGCGACGAGAGCAATTCAAATTTAATTCAACATATTAAGAGTGAagtgatcgaagtgaaacatcatcatcagcaacagcaattgcatgcgcagactttaactcagcaaggacaatcccaacaacagcagcagcatcagcagcagcaacagcaacatcaacagcagcagcagcaacaacaacagcagcaacagcaacagcagcagcaacaacaacaacaacatcagcaacatcaagatatttcgggagccactgtcatggaaattgatccaagcaatatcaaaCATGAACCAGGAATGATCATCACACCGGAAATTGTCACAATGATGGCAACGGGTCAAATGGATATATACTCAGATGCCAGTGAGGATTCATTGATGATTGCGAATGGTTCCCCAAATGACAATAACGAGCCACACTATACAAATTTGGACCAACCGCAAGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGTTTAACGAAAGCCTCGGTGACGTATGGCATCCCGTCAACAACATTGTGGCAACGTGCCCATCGCATGGGCATTGAAACACCCAAAAAAGAAGGCGGTACCAAATCATGGAATGAAGATTCATTAAATAGCGCACTTGAGGCATTGAGAACTGGTCAAATATCAGCAAATAAAGCCTCAAAAGCTTACGGTATTCCGTCCTCGACATTATATAAAATTGCTCGTCGCGAAGGCATTCGATTAGCAGCGCCATTTAATGCAGCGCCGACAACATGGACGCCAGAAGATTTAGAGCGTGCATTGGAAGCAATTCGTGCTGGTCATACGTCCGTCCAAAAGGCTAGCTCAGAATTTGGCATACCAACAGGTACATTATACGGTCGCTGCAAACGGGAGGGAATTGAGTTATCCCGATCTAATCCAACACCATGGTCGGAAGATGCTATGAATGAAGCACTGAATTCCGTGCGAGTTGGTCAAATGTCCATTAATCAGGCGGCTATACACTACAACCTACCCTACAGTTCATTGTATGGCCGTTTCAAACGTGGCAAATATGATATCTCCAATACGAGTGCAACATCAATCAATAACACATCAGGCAACACAAGCGGAAGTATTGAAATTATTGAGCATAGTCCAGAGAATTCGttgcacatgtttcagcagcaattccaatacagtccagcgccgcagtctaaccatcagactcaacagcagcaacaacaacaacagcagcagcagcaacaacatcaacaacaacaacaccaaccacaacaacagcagcaacaacaacacatccatcaacaagttgtacacattcaacaccaaccaacacaacaacaccatcatcaacaacaacaacaacatatccaacaacaagatgttgttacctcaacaaGTCAGGTTCATACCCAAGCTGGACAAATCCAACATATTTATCACAGCACCCCAGAGAGGAGTTGA
- Protein Sequence
- MAYAVTIHKSKGGLLRTAEQLKIKGLCETAESVDEAEAATATITLSENNITQTVVGNIVNSSQVSGGQTITTTAVSQHSAEDSNSDKPSATKICKTEQASSPNSNNGSVTVPPGTAIVTQIVVARDVKDNKNMTSIGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSQDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTIHHQSSTGDESNSNLIQHIKSEVIEVKHHHQQQQLHAQTLTQQGQSQQQQQHQQQQQQHQQQQQQQQQQQQQQQQQQQQQHQQHQDISGATVMEIDPSNIKHEPGMIITPEIVTMMATGQMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQPQDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDISNTSATSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQHQQQQHQPQQQQQQQHIHQQVVHIQHQPTQQHHHQQQQQHIQQQDVVTSTSQVHTQAGQIQHIYHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00671519; iTF_01253442;
- 90% Identity
- -
- 80% Identity
- -