Pmac059534.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454526.1:265157411-265175458[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-09 2.7e-07 32.7 0.0 1 38 261 299 261 304 0.89 2 4 9.6e-12 2.2e-09 39.4 0.1 2 39 316 353 315 356 0.94 3 4 1.1e-16 2.6e-14 55.2 0.0 1 45 370 415 370 415 0.98 4 4 1.4e-18 3.3e-16 61.2 0.0 1 43 422 465 422 467 0.96
Sequence Information
- Coding Sequence
- ATGACCAGTCTAGGAATGGGAAtgAACGGCGGTCTCCTCGGAGTACCAATGGGTTTCTTAGATTTCGCACCTGAACCACCAGCACCATCGGCTACGCCTGTTACAGTGACGGAACATGTCGACTTGTCCTGCAATCCCAGTACAGATACACGAGACTTATCAAATCCCACCGAAGCGCTCGATATTGACAATCATTTAGCACAGCACATGATCCAACGGCTTGATCAGTCACCCATGCATACGATCCACCATCAGTCATCGACGGGCGATGAGAGTAACTCCAATCTAATTCAGCACATCAAGAGCGAAGTAATTGAAATGAAGCATCATCAtcaccagcagcagcaacaacaattaCATGTGCAAGCTTTATCACAACAAGGACAAtctcaacagcagcagcaacaacagcaacaccaacagcagcagcaacaccagcagcagcagcaacaacaacaacaacaacaacaacagcaacaacagcagcagcagcagcagcaacaacaacaacaacagcaacaacatcagcagcatcAAGACATTTCCGGAGCAACTGTCATGGAAATTgatacgagcaatattaaacaTGAGCCAGGAATGATTATCACACCGGAAATTGTAACAATGATGGCAACGGGTCATATGGATATATACTCAGATGCCAGCGAAGATTCATTGATGATTGCGAATGGTTCCCCCAATGACACTAAGGAGCCACACTATACGAATTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGTTTGACGAAAGCCTCTGTGACGTATGGTATCCCTTCGACAACCTTGTGGCAACGCGCTCATCGTATGGGCATTGAAACACCCAAAAAGGAGGGCGGTACCAAATCATGGAATGAAGATTCATTGAACAGCGCCTTGGATGCATTGCGAACTGGCCAAATATCAGCAAATAAAGCCTCGAAGGCCTACGGTATTCCGTCCTCGACATTATATAAAATTGCACGACGCGAGGGTATACGACTGGCGGCACCATTCAATGCGGCGCCCACAACATGGACACCCGAGGATTTAGAACGTGCTTTAGAAGCCATTCGTGCTGGTCATACGTCCGTCCAAAAGGCCAGTTCTGAGTTTGGTATACCAACAGGCACACTTTATGGTCGCTGTAAGCGTGAAGGTATTGAATTGTCTCGTTCCAATCCGACACCGTGGTCAGAGGATGCTATGAATGAGGCATTAAATTCTGTTAGagttGGACAGATGTCCATCAACCAAGCGGCTATTCACTACAACCTCCCCTATAGTTCCCTGTATGGCCGCTTCAAGCGCGGTAAATATGAACTAACGAACACCAGTGCATCATCAATCAACAACACATCGGGCAATACAAGCGGAAGCATTGAAATAATCGAACATAGTCCAGAAAATTCGTTACACATGTTTCAGCAACAATTCCAATACAGTCCAGCGCCGCAGTCTAATCATCAaacccaacaacaacaacagcagcagcaacaacagcaacagcagcaacaacagcagcaacagcatcaacaacaacatcaacagcaacCACAACAACACATCCATCAGCATGTTGTGCACATTCAACAACAAACCCCTCAAcatcatcatcaacaacaacaacaacatatcCAACAGCAAGATGTTGTCACCTCAACAAGTCAGGTTCACACCCAAGCTGGACAGATCCAACAGATCTATCACCATCACAGTACCCCCGAGAGGAGTTGA
- Protein Sequence
- MTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTIHHQSSTGDESNSNLIQHIKSEVIEMKHHHHQQQQQQLHVQALSQQGQSQQQQQQQQHQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQHQDISGATVMEIDTSNIKHEPGMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDTKEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALDALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYELTNTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQQQQQHQQQHQQQPQQHIHQHVVHIQQQTPQHHHQQQQQHIQQQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01356763;
- 90% Identity
- iTF_00671519;
- 80% Identity
- -