Sjav010395.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sphaerogastrella javana
Gene Symbol
sip1
Assembly
GCA_037040025.1
Location
JBANCZ010004550.1:676-3429[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.5e-96 8.4e-92 310.3 14.2 3 275 441 708 439 708 0.98
2 2 0.12 6.6e+03 -1.0 0.0 160 202 723 762 713 763 0.57

Sequence Information

Coding Sequence
atgtcCGACACTGAATACGAGCGATTCGAGATCACAGACTATGATCTGGACAACGAGTTTAACATAAACAGACCGCGCCGACGCCACACCAAGCATCAACAAATCTATGGTATTTGGGCCGATGACAGCGACAATGAGAGCGAAGGCGAAAGCAGCGGTCGGAGGAGGCGGCGCGGCATGGGGAGCGGCGCCGGCAAGAAGCCCAAGGATTACACGGCGCCAGTGAATTTCGTTGCCGGCGGCATACAACAATCCGgcaagaagcagaagaaggagaaggagaaggagaaggatgCCATAGTGGATAGTGAGGGCACTGAGGGCAGCGAGGCGGATGACAGCGATGAGGCGCGTCCATCGTTTGGTCGCAGGCAGCCGCCGCTGATGGATCAGAGCGAGGGCAACAGCTCGGACAGTTCGGCGGATGCAGAGGAGCAGCCGCGTCAGAGCACGTCCGGCgcggcgtcgtcgtcgtcgtcgtcgcggcAGACAGCTGGATTGAGGCACAAATCGCATATAGCGAGCAATCGCAATGTGGGCGCATGGGAGCAGCATACGCGCGGCATTGGGgcgaagctgctgctgcagatgggCTACGAGCCGGGCAAGGGTTTGGGCAAGGATCTGCAGGGTATATCGCAGCCAGTGCAGGCGCATGTGCGCAAAGGCCGAGGAGCAATTGGTGCGTATGGCCCTGAAACGGCGGCCAGTGTGGGCGGACAGCCGAAGGCGCTAAAAGTCGATGAGGATGTGAAGGAGGCCAAAGAGTTCAAGGAGCAGATGAACAAGTGGAAGAAGGGCGGAAGCACGGAGCCGCGGGAGAAGGCGGCCAACAAACGCTACTACTACAAATCCGTGGAGGAAGTCATAGCCAAGGGCAAGAAATCGGATCACCTGCTGTCAGAGAAGCTGAGCAAGCGTCTGGGCAATGTGCCAGTCATCGACATGACCGGGCCAGAGCGACGCGTGCTCAGCGGCTACCATGCCCTGGCCCAGACTAAGATCACGCCCGAGGAGGTGCTCTATGAGGATACGCAGCTCAACGATGATCAGACAGGCGAGAAGACAACCACGCCCGTCTGTGTGTTCAGCATGCCGGAGCTGACGCATAatttgcagctgctggtgAGCCAATGTGAGCAAGAGATCATCGCCATCGATAAGGCGGAGCGAGAGAGCTCGGATCGCCAGGCTGCGCTGGAGCATGAGCAcaaacagttgcagcaactgGTGCAGTTGGAGCGGAATCACATGGACACGCTGCAGGCGACGCTCGAGCGACTGGATCAGCTTAGCGAGAATCCAGAACTGAGCATGTCGCAGGCGGAGCAGCTGttcctgcagctgcagcacgaCTATGCCGCCGAGTATAAGGAGTTTGGCCTGGCCGATCTGGCAGCGGGTGTCATAGCACCTCTGCTAAAACGTGACCTAAGCGATTGGCAGCCGCTGGAGCAGCCCACACAGCCTCTTCAGCAGGTTAAACGCTGGCGCGGCATACTGCAGCAGGAGGATGCTTTGGCGGATCAGTCACGCAACGTATTCGATCCCTACTCCTCTCTTATTTGGGCCGGGGTCATGCCCTCGTTTCGTGCCTGCGCCGCCAGCTGGCAGCCCAAGCAGTACGCGCCCATGGCTGCGCTGCTGGACGCCTGGGCGCCACTGCTGCCCACTTGGGTATTGGATTCGGTGTTGGAGCAACTGGTGCTGCCGCGTCTGACCGTGGGCGTTAGTGATTGGGATCCACTGACCGATACGGTGCCCATACACAGCTGGATACTGCCCTGGCATGGCATATTGGGTGGCAAACTGGAGGAGTCCATTTATCCGCAGATTCGCAATAAACTGGGCGTGGCGCTGCAGGCGTGGTCACCGCAGGATCGTTCCGCACGCGCCATGTTGACGCCCTGGAAGTCGGCATTCCCCGAGGAGCAAATGGTGGAGTTTCTGCTGCGCCATATTATACCCAAGCTACAGGCTGTTCTGGCCGATTTCATCATCAACCCGTTGCAGCAAAATTTGGAACTGTGGCACCAGGTATGGGAGTGGCATGAGCTCATACCGGTACAGCACATGGCTCAGCTCCTGGACAAACATTTCTTTCCACGCTGGATGCAAGTGCTGGTCATGTGGCTCAATCAATCGCCGGATTATGCAGAAATCTCGCGCTGGTATTCCGGCTGGAAGGGCATGTTCAGCGAGGCCGTACTGCGTGAGCCCTGCATCAAGGAGCATTTGCGTCGTGCTCTCGACATGCTGCATCGTTCCACAGATGCTGTGCTGCAGCCGACAGCAGCCCCACTCCCTCACATGCCGCCTGCCCCTGTACCACCAGTCATGCTCACGCCCGTGATGCTAGTCGATATTCCTCCAACGCCGGCCCAGCTGGAATTCAAGGAGCTCGTCTCACAGAAATGCGCCGAGCTGGGCATCATATTCGCCCCACTGCCTGGACGCCGCGAGATTGGCAAACAGATCTATCGCGTTGGGAAACTCTTCTGCTACATCGATCGCAATGTCTGCATGCTGAGCGATGGCAGCTTTACCAACTGGCAACCATCCTCGCTCAATCATCTTCTGGAGCGTGCACAGACAGGCATTCTCTAG
Protein Sequence
MSDTEYERFEITDYDLDNEFNINRPRRRHTKHQQIYGIWADDSDNESEGESSGRRRRRGMGSGAGKKPKDYTAPVNFVAGGIQQSGKKQKKEKEKEKDAIVDSEGTEGSEADDSDEARPSFGRRQPPLMDQSEGNSSDSSADAEEQPRQSTSGAASSSSSSRQTAGLRHKSHIASNRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPETAASVGGQPKALKVDEDVKEAKEFKEQMNKWKKGGSTEPREKAANKRYYYKSVEEVIAKGKKSDHLLSEKLSKRLGNVPVIDMTGPERRVLSGYHALAQTKITPEEVLYEDTQLNDDQTGEKTTTPVCVFSMPELTHNLQLLVSQCEQEIIAIDKAERESSDRQAALEHEHKQLQQLVQLERNHMDTLQATLERLDQLSENPELSMSQAEQLFLQLQHDYAAEYKEFGLADLAAGVIAPLLKRDLSDWQPLEQPTQPLQQVKRWRGILQQEDALADQSRNVFDPYSSLIWAGVMPSFRACAASWQPKQYAPMAALLDAWAPLLPTWVLDSVLEQLVLPRLTVGVSDWDPLTDTVPIHSWILPWHGILGGKLEESIYPQIRNKLGVALQAWSPQDRSARAMLTPWKSAFPEEQMVEFLLRHIIPKLQAVLADFIINPLQQNLELWHQVWEWHELIPVQHMAQLLDKHFFPRWMQVLVMWLNQSPDYAEISRWYSGWKGMFSEAVLREPCIKEHLRRALDMLHRSTDAVLQPTAAPLPHMPPAPVPPVMLTPVMLVDIPPTPAQLEFKELVSQKCAELGIIFAPLPGRREIGKQIYRVGKLFCYIDRNVCMLSDGSFTNWQPSSLNHLLERAQTGIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00476613;
90% Identity
-
80% Identity
-